Gene Sputcn32_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_0090 
Symbol 
ID5078865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp102007 
End bp103152 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content48% 
IMG OID640497210 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001181625 
Protein GI146291201 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCAGA CAATTAAACT TGCCTCAGTT ATAAGCGTGG CGTTATGGAT GGCAGCTTGC 
AGCCCTCAAG AAGAGACAGC TCAAACAGGT GCTGGGCCGC AGAGCATGGA AGTGGGAATT
CTCAATGTTG TCGCTAAGCC TCAGGTTATC CAAGTGGAGT TACCGGGTCG CAGTAAAGCG
TTCCTCGAGG CCGAAGTTCG CCCGCAGGTA AATGGTATTA TCACTAAGCG TAGCTTCGTA
GAGGGCGGCA ATGTGAAGCA GGGCGAGTCT TTATATCAAA TAGACTCAGC GACATACAAA
ACGGCACTCG TCAGTGCGAA TGCAGATTTA GCCAGAGCGA ATGCGAGTCT AGCATCGGCG
AAAGCTAAAG CGGCTCGTTA TCAGCAATTA GTGAAAACGA ATGCGATCAG TAAGCAAGAT
TTCGACGAAG CCGAAGCTGC ATACAAAGAG GCATTGGCCA GTGTCACTGT GGCTGAAGCC
GCAATCAATA CGGCTAAGAT TAACCTGCAA TATACAGAAG TATTAGCACC AATTTCCGGT
CGTATCGGTA AGTCGAGTGT CACAGCCGGG GCGTTGGTGA CAGCGAACCA AAGCCAAACC
TTAGCAACGA TTCAACAGCT TGATCCAATC AATGTGGATA TCGCGCAATC GAGTGCACAG
TTACTGCGTC TTAAAGCTAA GTTAAAACAG GGTAAGTTAC AGGTAGTCGA TAACGCTGAC
GTACAGTTAG TACTGGAAGA CGGCACTATC TATGGTCATT TAGGCAAGTT GCAATTTACG
GAAGTCAGTG TGGATGAGAA CACTGGCTCC GTTATTCTGC GCGCCGAGTT TCCAAACCCT
GATGGCATTT TATTACCGGG CATGTACGTT CGCGCAGTGC TAAATGCGGG TACAGATCCT
GAAGCTATTA TGGTTCCGCA AAAAGCCATT AGCCGTAACT CTAAAGGCGA AGCTGTGGCT
ATGGTAGTGA ATGACCAAGG TGTTGTGGAA GCGAAAACAG TGACAACAGC AGAGGCTATT
GGTCACGAGT GGCGTATTAC TGAAGGGCTT GCTGCTGGCG ATAAGTTGAT TGTCGAAGGC
TTGCAAAAAA TTCGCCCCGG AGCGCCAGTA ACACCCAAAG TTATTTCTGA AACGCAAGCA
CAATAG
 
Protein sequence
MRQTIKLASV ISVALWMAAC SPQEETAQTG AGPQSMEVGI LNVVAKPQVI QVELPGRSKA 
FLEAEVRPQV NGIITKRSFV EGGNVKQGES LYQIDSATYK TALVSANADL ARANASLASA
KAKAARYQQL VKTNAISKQD FDEAEAAYKE ALASVTVAEA AINTAKINLQ YTEVLAPISG
RIGKSSVTAG ALVTANQSQT LATIQQLDPI NVDIAQSSAQ LLRLKAKLKQ GKLQVVDNAD
VQLVLEDGTI YGHLGKLQFT EVSVDENTGS VILRAEFPNP DGILLPGMYV RAVLNAGTDP
EAIMVPQKAI SRNSKGEAVA MVVNDQGVVE AKTVTTAEAI GHEWRITEGL AAGDKLIVEG
LQKIRPGAPV TPKVISETQA Q