Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0090 |
Symbol | |
ID | 5078865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 102007 |
End bp | 103152 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640497210 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001181625 |
Protein GI | 146291201 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGCAGA CAATTAAACT TGCCTCAGTT ATAAGCGTGG CGTTATGGAT GGCAGCTTGC AGCCCTCAAG AAGAGACAGC TCAAACAGGT GCTGGGCCGC AGAGCATGGA AGTGGGAATT CTCAATGTTG TCGCTAAGCC TCAGGTTATC CAAGTGGAGT TACCGGGTCG CAGTAAAGCG TTCCTCGAGG CCGAAGTTCG CCCGCAGGTA AATGGTATTA TCACTAAGCG TAGCTTCGTA GAGGGCGGCA ATGTGAAGCA GGGCGAGTCT TTATATCAAA TAGACTCAGC GACATACAAA ACGGCACTCG TCAGTGCGAA TGCAGATTTA GCCAGAGCGA ATGCGAGTCT AGCATCGGCG AAAGCTAAAG CGGCTCGTTA TCAGCAATTA GTGAAAACGA ATGCGATCAG TAAGCAAGAT TTCGACGAAG CCGAAGCTGC ATACAAAGAG GCATTGGCCA GTGTCACTGT GGCTGAAGCC GCAATCAATA CGGCTAAGAT TAACCTGCAA TATACAGAAG TATTAGCACC AATTTCCGGT CGTATCGGTA AGTCGAGTGT CACAGCCGGG GCGTTGGTGA CAGCGAACCA AAGCCAAACC TTAGCAACGA TTCAACAGCT TGATCCAATC AATGTGGATA TCGCGCAATC GAGTGCACAG TTACTGCGTC TTAAAGCTAA GTTAAAACAG GGTAAGTTAC AGGTAGTCGA TAACGCTGAC GTACAGTTAG TACTGGAAGA CGGCACTATC TATGGTCATT TAGGCAAGTT GCAATTTACG GAAGTCAGTG TGGATGAGAA CACTGGCTCC GTTATTCTGC GCGCCGAGTT TCCAAACCCT GATGGCATTT TATTACCGGG CATGTACGTT CGCGCAGTGC TAAATGCGGG TACAGATCCT GAAGCTATTA TGGTTCCGCA AAAAGCCATT AGCCGTAACT CTAAAGGCGA AGCTGTGGCT ATGGTAGTGA ATGACCAAGG TGTTGTGGAA GCGAAAACAG TGACAACAGC AGAGGCTATT GGTCACGAGT GGCGTATTAC TGAAGGGCTT GCTGCTGGCG ATAAGTTGAT TGTCGAAGGC TTGCAAAAAA TTCGCCCCGG AGCGCCAGTA ACACCCAAAG TTATTTCTGA AACGCAAGCA CAATAG
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Protein sequence | MRQTIKLASV ISVALWMAAC SPQEETAQTG AGPQSMEVGI LNVVAKPQVI QVELPGRSKA FLEAEVRPQV NGIITKRSFV EGGNVKQGES LYQIDSATYK TALVSANADL ARANASLASA KAKAARYQQL VKTNAISKQD FDEAEAAYKE ALASVTVAEA AINTAKINLQ YTEVLAPISG RIGKSSVTAG ALVTANQSQT LATIQQLDPI NVDIAQSSAQ LLRLKAKLKQ GKLQVVDNAD VQLVLEDGTI YGHLGKLQFT EVSVDENTGS VILRAEFPNP DGILLPGMYV RAVLNAGTDP EAIMVPQKAI SRNSKGEAVA MVVNDQGVVE AKTVTTAEAI GHEWRITEGL AAGDKLIVEG LQKIRPGAPV TPKVISETQA Q
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