Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_0013 |
Symbol | fadB |
ID | 5081488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 17094 |
End bp | 19244 |
Gene Length | 2151 bp |
Protein Length | 716 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640497129 |
Product | multifunctional fatty acid oxidation complex subunit alpha |
Protein accession | YP_001181548 |
Protein GI | 146291124 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000142726 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTACC AAAGTCCTAC AATTCAAGTT GAGTTACTCG AGGATAATAT TGCCAAGCTG TGCTTTAACG CACCCGGTTC GGTGAACAAA TTCGACAGAG AAACCCTCGC TTCGCTCGAT GCCGCATTAG ACAGCATCAA GCAAAATTCC AATATCAAAG CGTTAGTGCT GACCTCCAGT AAAGATACCT TTATTGTGGG TGCCGACATT ACCGAATTTT TAGGCCTATT TGCACAAGAT GATGCTGTAC TGCTCTCTTG GGTTGAACAA GCCAACGCTG TCTTCAACAA ACTCGAAGAC TTACCTTTCC CAACCGCATC TGCAATCAAA GGCTTTGCCT TAGGTGGCGG CTGTGAAACC ATTCTGGCAA CGGATTTTCG TATCGCAGAT ACCACAGCCA AAATCGGTTT ACCTGAAACT AAACTCGGCA TCATCCCAGG CTTTGGCGGC ACAGTTCGTC TGCCACGTGT AATTGGTGCA GATAACGCAC TTGAATGGAT CTCCACAGGT AACGACCAAC GCGCTGAAGA TGCACTGAAA GTCGGTGCTG TGGATGCTGT GGTTGCGCCA GAAGCATTAG AAGCGGCTGC GATTCAAATG CTCAAAGATG CTGTTGCAGA AAAGCTGGAT TGGCAAGCGC GTCGTAACCG TAAGCTGTCT GCCCTAACGC TGCCCAAACT TGAAGCTATG ATGTCATTCA CCACAGCTAA AGGCATGGTA TTTGCTGTTG CGGGTAAACA CTACCCAGCA CCAATGGCCG CAGTAAGCGT GATTGAGCAA GCATCGACTA AAGGTCGTGC TGAAGCATTA CAAATCGAAC ATCAAGCCTT TATCAAGCTG GCTAAAACCG ACGTTGCTAA GGCACTTATA GGTATCTTCC TTAATGATCA ACTCGTTAAA GGCAAAGCGA AAAAAGCGGG TAAGTTAGCC AAAGAAGTGA AAAACGCTGC CGTATTAGGT GCTGGCATTA TGGGCGGCGG CATCGCCTAC CAAAGCGCCA GCAAAGGCAC ACCGATTGTC ATGAAAGACA TTGCCCAGCC AGCATTAGAT TTAGGCCTCA ATGAAGCCGC CAAACTGCTA TCGGCGCAAG TTGCTCGTGG CCGTTCAACG CCAGAAAAAA TGGCCAAAGT GCTGAACAAC ATCACGCCTT CATTAGATTA TGCTGCGCTC AAACACAGTG ATGTCGTCGT TGAAGCCGTT GTTGAACATC CAAAAATTAA AGCACAGGTT TTAGCCGAAG TTGAAGGTTA TGTGAGTGAA GATGCGATTA TCGCGTCAAA CACCTCAACG ATTTCAATCA ACTTGCTCGC TAAGAGCATG AAGAAACCTG AGCGTTTCTG CGGTATGCAT TTCTTCAACC CAGTGCACAA AATGCCGTTG GTAGAAGTTA TCCGTGGCGA GCACAGCTCT GAAGAAACCA TCGCCTCTGT TGTGGCTTAC GCCAGCAAAA TGGGCAAAAC CCCAATCGTG GTTAATGATT GCCCAGGCTT CTTCGTTAAC CGCGTACTCT TCCCTTACTT TGCAGGCTTT AACGGCCTAC TTGCCGAAGG TGGCGACTTT GCTGCAATCG ACAAAGTTAT GGAAAAACAA TTTGGTTGGC CAATGGGCCC AGCTTACCTA CTCGACGTAG TGGGTTTAGA CACAGGTCAC CATGCCCAAG CAGTAATGGC TGAAGGTTTC CCTGATCGTA TGGGTAAATC TGGTACCGAC GCGATTGATG TGATGTTTGA GAACAAGCGC CTTGGCCAGA AAAATGGCAA AGGTTTCTAT GTCTATTCAG TTGATAGCCG TGGCAAACCG AAGAAAGATG TCGATCCTAC GAGCTACGGC CTATTGAAAG ATGCCTTTGG CGAGTTAAAA ACCTTTGAAG CCGATGACAT TATTGCCCGT ACTATGATCC CTATGATCAT AGAAACCGTG CGCTGTTTAG AAGAAGGCAT TGTCGCATCA CCTGCCGAAG CGGATATGGG CCTGGTTTAT GGCTTAGGTT TCCCGCCATT CAGAGGAGGC GTGTTCCGTT ACTTGGATAC CATGGGTGTC GCAAACTTTG TGGCCTTAGC AGACAAATAT GCTCACTTGG GCGGTCTGTA TCAAGTCACA GATGCGATGC GTACAAAAGC CACCAATAAT GGTAGCTACT ACCAAGCCTA A
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Protein sequence | MIYQSPTIQV ELLEDNIAKL CFNAPGSVNK FDRETLASLD AALDSIKQNS NIKALVLTSS KDTFIVGADI TEFLGLFAQD DAVLLSWVEQ ANAVFNKLED LPFPTASAIK GFALGGGCET ILATDFRIAD TTAKIGLPET KLGIIPGFGG TVRLPRVIGA DNALEWISTG NDQRAEDALK VGAVDAVVAP EALEAAAIQM LKDAVAEKLD WQARRNRKLS ALTLPKLEAM MSFTTAKGMV FAVAGKHYPA PMAAVSVIEQ ASTKGRAEAL QIEHQAFIKL AKTDVAKALI GIFLNDQLVK GKAKKAGKLA KEVKNAAVLG AGIMGGGIAY QSASKGTPIV MKDIAQPALD LGLNEAAKLL SAQVARGRST PEKMAKVLNN ITPSLDYAAL KHSDVVVEAV VEHPKIKAQV LAEVEGYVSE DAIIASNTST ISINLLAKSM KKPERFCGMH FFNPVHKMPL VEVIRGEHSS EETIASVVAY ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF NGLLAEGGDF AAIDKVMEKQ FGWPMGPAYL LDVVGLDTGH HAQAVMAEGF PDRMGKSGTD AIDVMFENKR LGQKNGKGFY VYSVDSRGKP KKDVDPTSYG LLKDAFGELK TFEADDIIAR TMIPMIIETV RCLEEGIVAS PAEADMGLVY GLGFPPFRGG VFRYLDTMGV ANFVALADKY AHLGGLYQVT DAMRTKATNN GSYYQA
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