Gene Sputcn32_0003 details

Gene Information

• Locus tag: Sputcn32_0003
• Symbol: recF
• ID: 5081478
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 2850
• End bp: 3932
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640497119
• Product: recombination protein F
• Protein accession: YP_001181538
• Protein GI: 146291114
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00706398
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTAA CCCGTCTTAA TATTGAAGCT TTTCGCAATA TTCAGTTTGC ACAGTTAATT 
CCTGCGCCAG GGATTAACGT GATTTATGGC CAAAATGGCA GCGGAAAAAC CAGTATTTTA 
GAAGCCATTT ATTTCCTCGG TATGGGGCGT TCGTTTCGCA GCCATTTATC GCAGCGAGTG 
ATTAATAACG ACAACGATAA GTTGACTCTA TTTGCGACGT TAAACTTAGC GCGCGGTGAC 
AGTAAAATCG GTTTGCGCCG ATTTCGTAGC GGTGAGACTG AAGTTAAAAT TGATGGCGAA 
AAGGTCAAAC GGCTATCGAC CTTAGCCGAA ACATTGCCTA TTCAAGTGAT CACACCAGAA 
AGCTTTTCGT TACTGTTTGA AGGCCCAAAA TCCCGTCGAC AATTTATCGA TTGGGGCGCA 
TTTCATGCCG ATCCGCAGTT TTATGGTGCT TGGACGAATG TTCGTCGTGT TATTAAGCAA 
AGAAATCAAT TGCTTAGGAA TGGTGCTGTT TACACTCATA TTCAATTTTG GGACCAAGAG 
TTTGTGCGTT ATGCCGAGCA GGTCACCGAA ATACGAAACC ATTATGTAGA CTCGTTAAAT 
GGGCTACTTA AGGGTATAAT CGGGGAGTTT TTACCGAGTG TAGATGTGAA GGTTTCATTT 
ACTCGCGGCT GGGATAGTAA GACGGATTTT GCAGAACTAC TCGAAAACCA ATATTCCAGA 
GATTTGGCCA CAGGTCATAC CGTCAGCGGT CCCCATAAAG CTGACCTTAG ACTTCGTGTA 
GGCAATTTGC CGGCGCAGGA TGCCCTGTCC CGTGGTCAAT TGAAATTATT AGTCTGTGCA 
CTGCGTATTG CACAGGGAAA GTTGCTCAAA CAACAAATAG ATAAACACAG TATTTATCTT 
GTGGATGATC TTCCATCCGA GTTGGATGCA CAGCATAGGC AGCTATTGCT TAAGCAGTTA 
ACGGATACCG GAGCACAAGT ATTTGTGACC GCCATCGATC CTGCTGCAAT AGTCGATTCG 
TTACACACGC CTCCTAATAG GATGTTTCAT GTGGAACAGG GACGTGTAAC GGTAGTTGAA 
TAA 

 

Protein sequence

MSLTRLNIEA FRNIQFAQLI PAPGINVIYG QNGSGKTSIL EAIYFLGMGR SFRSHLSQRV 
INNDNDKLTL FATLNLARGD SKIGLRRFRS GETEVKIDGE KVKRLSTLAE TLPIQVITPE 
SFSLLFEGPK SRRQFIDWGA FHADPQFYGA WTNVRRVIKQ RNQLLRNGAV YTHIQFWDQE 
FVRYAEQVTE IRNHYVDSLN GLLKGIIGEF LPSVDVKVSF TRGWDSKTDF AELLENQYSR 
DLATGHTVSG PHKADLRLRV GNLPAQDALS RGQLKLLVCA LRIAQGKLLK QQIDKHSIYL 
VDDLPSELDA QHRQLLLKQL TDTGAQVFVT AIDPAAIVDS LHTPPNRMFH VEQGRVTVVE