| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ent638_0877 |
|---|
| Symbol | secD |
|---|
| ID | 5111066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Enterobacter sp. 638 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009436 |
|---|
| Strand | + |
|---|
| Start bp | 977053 |
|---|
| End bp | 978900 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640491053 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_001175612 |
|---|
| Protein GI | 146310538 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAACC GTTATCCTTT GTGGAAGTAC ATCATGCTGG TCGTCGTGAT TATCGTCGGC
CTGCTGTACG CGCTTCCCAA CCTGTATGGT GAGGATCCGG CTGTTCAAAT CACTGGCGCG
CGCGGTGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAACACTTT ACAACAAGAA
AAAATTACCG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCTCG CTTCGACACC
ACCGACACGC AGCTCCGCGC CCGTGAAGCG CTGGTGAGCG TGCTGGGTGA TAAATATGTC
GTGGCGTTGA ACCTTGCTCC TGCAACCCCG CGTTGGTTAG CCTCTATCAA TGCAGAGCCG
ATGAAACTCG GTCTTGATCT GCGTGGTGGC GTTCACTTCC TGATGGAAGT GGATATGGAT
ACTGCGCTTG GCAAACTGCA GGAACAGAAT ATGGACGGCC TGCGCAGCGA TCTGCGCGAA
AAAGGCATTC CTTACACCAC CGTGCGTAAG GAAGATAACT ACGGAATGAG CATCACTTTC
CGTGATGCTG CCGCTCGCGA TCAGGCAGTG GATTATCTCT CTACGCGTCA CCGCGATCTG
GTGATTTCAC GTCAGGGTAG CAACCAGCTG CGTGCCGTGA TGACCGATGC CCGTCTGAGC
GAAGCGCGTG AATATGCGGT ACAGCAGAAC ATCAATATCC TGCGTAACCG TGTAAACCAG
CTTGGTGTTG CTGAGCCGCT GGTACAGCGC CAGGGTTCAG ACCGTATCGT GGTAGAACTG
CCGGGTATCC AGGACACTGC GCGCGCCAAA GAAATTTTGG GTGCGACAGC GACACTGGAA
TTCCGTCTGG TGAACACTAA TGTGGACCAA TCTGCCGCGG CGTCTGGTCG TGTGCCTGGT
GATTCCGAAG TGAAAGAAAC GCGTGAAGGT CAGCCTGTTG TGCTGTACAA GCGTGTTATT
CTCACCGGTG ACCACATTAC TGACTCCACG TCTAATCAGG ACGAATACAA CCAGCCGCAG
GTTAACATCT CGCTTGATAG CGCCGGTGGT AACATCATGT CGAACTTCAC CAAGGATAAC
ATCGGTAAAC CGATGGCGAC CTTGTTCGTG GAGTACAAAG ACAGCGGTAA GAAAGATGCT
AATGGTCGTG CAATCCTGGT GAAAGAGGAA GAGGTGATCA ACGTCGCCAA TATCCAGTCT
CGCCTGGGTA ACAGCTTCCG TATTACCGGC ATCAGTAACC CAAACGAAGC GCGTCAGCTC
TCTCTGCTGC TGCGTGCCGG TGCGCTGATT GCGCCTATTC AGATCGTTGA AGAACGTACC
ATTGGTCCAA CGCTGGGGAT GCAGAACATC ACTCAGGGCC TGGAAGCGTG TCTGGCAGGT
CTGGCGGTTT CGATTCTCTT CATGCTGTTC TTCTATAAGA AGTTTGGCCT GATTGCGACC
ACCGCGCTGA TCGCAAACCT GGTATTGATC ATCGGCATTA TGTCCCTGCT GCCAGGGGCG
ACGCTGACCA TGCCGGGTAT TGCAGGTATC GTTCTCACCC TTGCGGTGGC GGTCGACGCC
AACGTATTGA TAAACGAACG TATTAAAGAA GAATTGAGCA ACGGTCGCTC CGTACAACAA
GCGATCGACG AAGGCTATAA AGGCGCTTTC AGCTCCATCT TCGATGCAAA CGTAACAACA
CTGATTAAGG TTCTTATCCT GTATGCAGTG GGGACTGGCG CAATCAAAGG CTTTGCTATT
ACAACCGGTA TCGGTGTGGC AACGTCAATG TTTACCGCTA TTGTCGGCAC CCGTGCCATC
GTGAACCTGC TGTATGGCGG CAAGCGCGTC AAAAAGCTGT CTATCTGA
|
|---|
| Protein sequence | MLNRYPLWKY IMLVVVIIVG LLYALPNLYG EDPAVQITGA RGVAASEQTL IQVQNTLQQE
KITAKSVALE EGAILARFDT TDTQLRAREA LVSVLGDKYV VALNLAPATP RWLASINAEP
MKLGLDLRGG VHFLMEVDMD TALGKLQEQN MDGLRSDLRE KGIPYTTVRK EDNYGMSITF
RDAAARDQAV DYLSTRHRDL VISRQGSNQL RAVMTDARLS EAREYAVQQN INILRNRVNQ
LGVAEPLVQR QGSDRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ SAAASGRVPG
DSEVKETREG QPVVLYKRVI LTGDHITDST SNQDEYNQPQ VNISLDSAGG NIMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRAILVKEE EVINVANIQS RLGNSFRITG ISNPNEARQL
SLLLRAGALI APIQIVEERT IGPTLGMQNI TQGLEACLAG LAVSILFMLF FYKKFGLIAT
TALIANLVLI IGIMSLLPGA TLTMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRSVQQ
AIDEGYKGAF SSIFDANVTT LIKVLILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI
VNLLYGGKRV KKLSI
|
|---|
| |