Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_4375 |
Symbol | |
ID | 5086557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009432 |
Strand | - |
Start bp | 19014 |
End bp | 19733 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640485931 |
Product | type IV secretion system family protein |
Protein accession | YP_001170525 |
Protein GI | 146280370 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02791] P-type DNA transfer protein VirB5 |
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Plasmid Coverage information |
Num covering plasmid clones | 91 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 179 |
Fosmid unclonability p-value | 0.669124 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCATC GCCTCGGCAT CGTCGCCGCT CTCTCGGTCC TTCTCGGGGC GTCCGCCGCC AGCGGGCAGG GGGTGCCCGT CATCGACGCC ACCTCGATCT CGAACGCCAA GACGCAGTTC GCCCAGCAGC TGGCGCAGAT GATCAAGGAG TTCGAGGAGG CGCAGCGGCT CTATTCCGCC ATCAACGGCG CCACCGGCAT GGGCGAGGTC GTCGCCATGC TGAACGATCC GGACGTGCGC GAGGTGCTTG GTCCCGACGC GCAGAGGATC GCGGCCTCGT TCGACATCAA CCTCGACGAT CTGGGCGATC TCGCCGACAC GGCGAAGGCG GTCCATGCCT TTGCCTCGCT CGAGAACGAG AACATCACGG CCGAGGGCTT CTACCGGAGC GAACTTGACC GGATCAAGAA GCAGGCGGGG CGCAACACCG CGACCGGCGA GCGGATCGTC AATCTCTCCG ACGACCGACT TGGTGGCCTC GAGCGGCTCC GCCAGCAGAT CGGCATGGTC GAGACCCAGA AGGAGGTCGA TGCGCTGAAC ACGCGGATCG CGATTGAGCA GGCCATGCTG CAGAACGACA CCAACCGCAT TCAGGGCCTG TCGATGCTGC AGGCGGCGCA GGCGCAGGCG GAAGAGCAGC GGCAGGTCGA GCTGGCGGCG CAGCGCCGGC AGAAAGAGGC GGCCGGCTTC AGCGCCACCT TCGGCGGCAC ATCATTTTGA
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Protein sequence | MTHRLGIVAA LSVLLGASAA SGQGVPVIDA TSISNAKTQF AQQLAQMIKE FEEAQRLYSA INGATGMGEV VAMLNDPDVR EVLGPDAQRI AASFDINLDD LGDLADTAKA VHAFASLENE NITAEGFYRS ELDRIKKQAG RNTATGERIV NLSDDRLGGL ERLRQQIGMV ETQKEVDALN TRIAIEQAML QNDTNRIQGL SMLQAAQAQA EEQRQVELAA QRRQKEAAGF SATFGGTSF
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