| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_4372 |
|---|
| Symbol | |
|---|
| ID | 5086554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009432 |
|---|
| Strand | - |
|---|
| Start bp | 16912 |
|---|
| End bp | 17598 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640485928 |
|---|
| Product | VirB8 family protein |
|---|
| Protein accession | YP_001170522 |
|---|
| Protein GI | 146280367 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 92 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 182 |
|---|
| Fosmid unclonability p-value | 0.929771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCA GGGACGACAA GGAATTGGCG GCCTACCTGA AGGCCGCGCG GACCTTCGAC
TATGACCAGA GGCTCGCGGC GGAACGCTCG AAGCGCGTCG CCTGGGCGCT CGCGGGCGTG
GCAAGCCTTC TGGCCACCGC AAGCGTGGTG GCGGTGGCAG CCCTCGCGCC GCTGAAGGAG
GTGGTGCCCT TCGTGATCCG CGTCGATCAG GCGACCGGCG TGCCCGAGGT CATGACCGCG
CTGACGGACG GCCGGGAGAG CTACGACGAG GCGGTGGCGC GCTATTTCCT CGCCCGCTAC
GCCCGCGTGC GCGAGAGCTA CAGCTTTGCC GAGCGCCAGA ACATCTTCCA CGAGGTGACG
CTCATGTCGG CGCCCGAGGT GACGCGGCAG TTCTCCGAGT TCTTCAACGC CACCAACCCC
AAGAGCCCGC AGTACCTCTA TGGCCGCGAC ACCCACGCCA GCATCCGCAT CCGGTCGATC
TCGTTCCTTG GCGACCAGCT TGCACAGGTC CGCTTCACCC GGACCGAGCG CAACGAGCGT
GAAAAGCTGA AGAAGGAAAC CCTCTGGGTC TCGACGATCC AGTTCGAGTT CGACCCCAAG
GCCGAGATCA GCGCCGAGGA CCGGCTGGTC AACCCGCTCG GCTTCATCGT CCGCAACTAC
CGCGTCGATC CGGAGGTGGT CCAATGA
|
|---|
| Protein sequence | MIARDDKELA AYLKAARTFD YDQRLAAERS KRVAWALAGV ASLLATASVV AVAALAPLKE
VVPFVIRVDQ ATGVPEVMTA LTDGRESYDE AVARYFLARY ARVRESYSFA ERQNIFHEVT
LMSAPEVTRQ FSEFFNATNP KSPQYLYGRD THASIRIRSI SFLGDQLAQV RFTRTERNER
EKLKKETLWV STIQFEFDPK AEISAEDRLV NPLGFIVRNY RVDPEVVQ
|
|---|
| |