Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_4372 |
Symbol | |
ID | 5086554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009432 |
Strand | - |
Start bp | 16912 |
End bp | 17598 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640485928 |
Product | VirB8 family protein |
Protein accession | YP_001170522 |
Protein GI | 146280367 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 92 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 182 |
Fosmid unclonability p-value | 0.929771 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCCA GGGACGACAA GGAATTGGCG GCCTACCTGA AGGCCGCGCG GACCTTCGAC TATGACCAGA GGCTCGCGGC GGAACGCTCG AAGCGCGTCG CCTGGGCGCT CGCGGGCGTG GCAAGCCTTC TGGCCACCGC AAGCGTGGTG GCGGTGGCAG CCCTCGCGCC GCTGAAGGAG GTGGTGCCCT TCGTGATCCG CGTCGATCAG GCGACCGGCG TGCCCGAGGT CATGACCGCG CTGACGGACG GCCGGGAGAG CTACGACGAG GCGGTGGCGC GCTATTTCCT CGCCCGCTAC GCCCGCGTGC GCGAGAGCTA CAGCTTTGCC GAGCGCCAGA ACATCTTCCA CGAGGTGACG CTCATGTCGG CGCCCGAGGT GACGCGGCAG TTCTCCGAGT TCTTCAACGC CACCAACCCC AAGAGCCCGC AGTACCTCTA TGGCCGCGAC ACCCACGCCA GCATCCGCAT CCGGTCGATC TCGTTCCTTG GCGACCAGCT TGCACAGGTC CGCTTCACCC GGACCGAGCG CAACGAGCGT GAAAAGCTGA AGAAGGAAAC CCTCTGGGTC TCGACGATCC AGTTCGAGTT CGACCCCAAG GCCGAGATCA GCGCCGAGGA CCGGCTGGTC AACCCGCTCG GCTTCATCGT CCGCAACTAC CGCGTCGATC CGGAGGTGGT CCAATGA
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Protein sequence | MIARDDKELA AYLKAARTFD YDQRLAAERS KRVAWALAGV ASLLATASVV AVAALAPLKE VVPFVIRVDQ ATGVPEVMTA LTDGRESYDE AVARYFLARY ARVRESYSFA ERQNIFHEVT LMSAPEVTRQ FSEFFNATNP KSPQYLYGRD THASIRIRSI SFLGDQLAQV RFTRTERNER EKLKKETLWV STIQFEFDPK AEISAEDRLV NPLGFIVRNY RVDPEVVQ
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