| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_4368 |
|---|
| Symbol | |
|---|
| ID | 5086550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009432 |
|---|
| Strand | - |
|---|
| Start bp | 11754 |
|---|
| End bp | 13895 |
|---|
| Gene Length | 2142 bp |
|---|
| Protein Length | 713 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640485924 |
|---|
| Product | TRAG family protein |
|---|
| Protein accession | YP_001170518 |
|---|
| Protein GI | 146280363 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 70 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 170 |
|---|
| Fosmid unclonability p-value | 0.538935 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTCG CGAACTGGCA CCGGCTCGGT CGCCCGGCGA AGGCGGCGGC ACTGGCCTCG
GCCGCCGCCT TCTGCATCGG CGGGGGCCTC GCGGCGCAGG CTTGGGTGCT GCACTGGGGG
CTGAAGGTTC CCCTCGCCCT GCCCCGTGAT CTGCTGATCT GGCCGCAGGC GGCGCTCGCC
GGCTATAGCG ACCCGCTCAC CGTGAAGTGG ATCAAGCTAG CCGGGCTGGC GGGACTTCTG
CCGACGGCCG CGCTGGTGGC GGCGATCCTG AAGGCGCGGC CGAAGATCGA CCTGCACGGC
ACGGCGGCCT TCGCGCGGGA AAGCGAGATC GCGGCGGCCG GCATGCGCGC CAAGGCCGGG
CTCATCGCAG GCTTCACCGG CCCCCTGCCC TCGCCGCACT ACGGCAAGCC CGTGGGCCGG
TTTGGGCAGC TGGATGAAGA GCATGGCCGG GTGAAGGTGG AGAAGAAGAG CCGGCTGAAC
GCCCGGAACC TGCTCGTCTA CGGGGGGCCG GAGCACATGC TGCTCTATGC CCCCACCCGC
TCCGGCAAGG GCGTCGGCGT GGTCGTGCCG AACCTGCTGA ACTGGCCGGA CTCGGCCGTC
GTCCTCGACA TCAAGAAGGA GAACTGGCAG CTGACGGCTG GCTTCCGCAA GGCCGGCGGG
CAGGAGGTCT TCCTCTTCGA CCCGCTGGAC CCCGAGGGCC GCACCCACCG CTGGAACCCG
CTGGCGAGCG TCCGCCGCGG CACGGCCTTC CAGGTCGAGG ACCTGCAGCG CCTCGCTGAC
CTCTTCATCC CGGTGGCCTC CAAGGATCCG TTCTTCGACC GCGCCGCGCA GACCGCCTTC
GTCGGTGTCG GGGGCTATCT CGCCGAAACG CCGGAACTGC CTTTCACGCT GGGCGAGCTT
TACCGACAGC TGACGCTGAC CCCGAACTTC GTGCGCACCT TCAAGGCCCG GATCGACGAG
CGGGCCGAGG CCGGGCGGCC GCTGTCGCTC CAGACGATCG CGACGCTGAA CGACTTCCTC
TCGAAAAGCG AAAACACCTT CGAGAGCGTG AAATCGACCA TCACCGCCAA CCTCGGCCTC
TTCGCCAACC CGCTCCTCGA CCGTGCGACA GCGGCTTCGG ACTTCGACTT CGCGGACCTC
CGCCGGAAGC GGATGACGAT CTATGTCGGG ATCACTCCGA ACAACCTCGG CCGTCTCGGG
CCGCTCCTGA ACCTCTTCTT CCAGTCCTGC GTGGACGCCA ACATGCAGGA GCTGCCCGAG
CACAATCCGG CGCTGAAGCA CCGGGTCCTG CTCTGCATGG ACGAGTTCGC GGCGGTGGGC
GAGTTGCCTG CCTTCAAGCG CGGCATCGGC TATTTCGCCG GCTACGGGCT GAAGGTGCTG
ACCATCGTCC AGACCCCGGC GCAGCTTGCC GACATCTACG GGTCGGACGG CGCCGAAGCC
TACATGGACA ACGCCGGCAT CACTGTGGTC TTCACGCCGA AGGGGCTGAA GGAGGCGCGG
AACCTCTCCG AACGGCTGGG GACCTACGGG GCCGAGGCCA TCTCCACCTC GCGCTCGAAG
CTGCTGGCCA GCCGCAACCC GCCCACGATC AGCGTGAGCG AGCAGAAGCG GGCGCTGATG
ATGCCCCAGG AGCTGCTGCA GCTCGACCAG AGCGGGGCGA TCATCCTCGC CGCCGGCCAC
CCGCCGATTC GGGCGAAGAA GATCCGCTTC TATGCCGAGG AAGCGTTCCT GGAGCGGAGC
CGCATTCCCC CGCCCGAGAT CCCTGCCTCA CGCGCTGACG CCACCGCCGA CGATGTCCGG
CGCCTGCGCG ACGAGAACCG GCGGATGCGC GAGGACCTGT CTGCCCTCAC GGACGAGGTG
CGCCGGATCG CGGCGCTGAA GCTCGCGCAG GCGGCCAACG TGGCCGCGGG CCAGCCCGCC
GAGGTGCCGA TGACCGACGA GGAGATCGCG AAGCCCGAGA CCATCTCCTT CGACCGGCTC
GCGCTCGCCA GCGACAGCGT GCGGGCGAAG ATCAAGAGCC TCGCCGCCGC TGGCACGATC
GGCACGAAGG AAGGCGTGGC CGCCATCCTG GGCGAGATGG GCGTGGCGGT GCCCGAAGAG
AAAGCCGCAA AGCCGAAGAA GGAGAAGGTG AGACATGGCT GA
|
|---|
| Protein sequence | MIVANWHRLG RPAKAAALAS AAAFCIGGGL AAQAWVLHWG LKVPLALPRD LLIWPQAALA
GYSDPLTVKW IKLAGLAGLL PTAALVAAIL KARPKIDLHG TAAFARESEI AAAGMRAKAG
LIAGFTGPLP SPHYGKPVGR FGQLDEEHGR VKVEKKSRLN ARNLLVYGGP EHMLLYAPTR
SGKGVGVVVP NLLNWPDSAV VLDIKKENWQ LTAGFRKAGG QEVFLFDPLD PEGRTHRWNP
LASVRRGTAF QVEDLQRLAD LFIPVASKDP FFDRAAQTAF VGVGGYLAET PELPFTLGEL
YRQLTLTPNF VRTFKARIDE RAEAGRPLSL QTIATLNDFL SKSENTFESV KSTITANLGL
FANPLLDRAT AASDFDFADL RRKRMTIYVG ITPNNLGRLG PLLNLFFQSC VDANMQELPE
HNPALKHRVL LCMDEFAAVG ELPAFKRGIG YFAGYGLKVL TIVQTPAQLA DIYGSDGAEA
YMDNAGITVV FTPKGLKEAR NLSERLGTYG AEAISTSRSK LLASRNPPTI SVSEQKRALM
MPQELLQLDQ SGAIILAAGH PPIRAKKIRF YAEEAFLERS RIPPPEIPAS RADATADDVR
RLRDENRRMR EDLSALTDEV RRIAALKLAQ AANVAAGQPA EVPMTDEEIA KPETISFDRL
ALASDSVRAK IKSLAAAGTI GTKEGVAAIL GEMGVAVPEE KAAKPKKEKV RHG
|
|---|
| |