Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_4279 |
Symbol | |
ID | 5086457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009431 |
Strand | + |
Start bp | 37982 |
End bp | 40792 |
Gene Length | 2811 bp |
Protein Length | 936 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640485837 |
Product | diguanylate phosphodiesterase |
Protein accession | YP_001170431 |
Protein GI | 146280275 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGGCCG CCTGCGACCC TTCGATCTGC GAGACGGAAC CCATCGCAAC GCCCGGCGCG ATCCAGCCGC ACGGCGCGCT GGTCACGGCG CAGGCCGACA GCGGCCTCGT CGCCCACGCC AGCGCCAACC TGGCCGAGAT CCTCGGCCTG CCGGCGGCCG CGGCCCTGGG CCGTCCCATC TGCGACGTGA TCGGGCACGT CAACGAGGTC CTGCTGCGCG AGGCGCGCCG TCGCGGCTCC GAGACACTGG AGTCGATCGG ATCGCTGCGC CGGGCGGACG GGCGGCTGCT GCATCTCCAT GCCTTCCAGT CGGGCGACTA CATGTGCCTC GACCTCGAGG CGGTGCGCGA CGAAGACGAC CGGCTGCCGC CGGGGCTCAC CCAATCGGTG ATCGAGACCT TCTCGGCCGC CGTGACGCAG GTCGAGCTGT GCGAGCTTGC GGTGCATGGG CTGCGGCAGG TGACGGGCTA TGACCGGGTG ATGGCCTATC GCTTCGGACC GGACGGCCAT GGCGAGGTCA TCGCCGAGGA CCTCAGGCCG GATCTCGAGC CCTACCTCGG CCTGCGCTAC CCGGCCTCGG ACATTCCGCA GATCGCGCGG GCCCTCTACC TGCGCCAGAG GGTGGGCTCG ATCGCGGATT CGCACTACGA GCCGGTGCCG CTGCTGGGCC ATCCCGGGAT CGACGCCCTC GACCTGACGC ACAGCGCCCT GCGCAGCGTC TCGCCGATCC ACCTCGAATA CATGCGGAAC ATGCACACGG CCGCCAGCCT GACCATCGGA CTGGCCGATG GCGACAGGCT GTGGGGGATG CTGGTCTGCC ACAACATGAC CCCCCGGACC GCCGGCCCCG AGCGTCGGGC GGCGGCGGGC ATGATCGGTC AGGTGGTCTC GCTGCTGCTG AGCCGGCTGG GCGAGGTCGA GAATGCCGCC GAGAAGCTGG CCCGGCAGGC GACGCTCTCG ACGCTGGTCG ATCGGCTGTC GATCGGGGAC ACGCTGGCCG CGGCGATCAC CGCGGCCGAT CCGCTGCTGC TCGAACTGGT CGGGGCCAGC GGGGCCGTCG TCCGACTGGA AGGGCAGGAA CTGCATTTCG GGCGGATACC GCCCGCCGAC GCGGTGCGCA GGGCCCTGGA GATCCTGGGC CCCACCCGGC CGCCAGAGAT CCTGGCCATC GACGATGTCA CCCTTCGCCA TCCCGAACTG CCGGAACTGG CCGCGGCGGG AAGCGGCCTC CTCCTGCTCC CCCTGCCCTC GGGCGACGGA GACCTGATCG CCTGGTTCCG CCCCGAGCAT GTGCAGACCA TCACCTGGGG CGGCAATCCG GCCGAACATG GGACCTGGAA CCCGCAAACC CGGCGGATGA GCCCGCGCGC CTCGTTCGAC GCCTGGAAGG AGACGGTCAC CGGCCGCTCG CTTCCCTGGA CCTCGATCGA ACTGGCCTGC GCCCATGACC TGGGTGAGGC CATCACCGCC GAGATGGCGC AGCGCACCCG GGCGGCGCTC GCGCGCCTGC GCCACTACGA TCCGCTGACG GGCCTTGCGA ACCGCAGCTT CCTCCAGGAA TGTCTGGCCA ACGCCACGCT GGCCGGCGGG CCGGATGTGG CCCTGCTCTT CATCGACCTC GACCGGTTCA AGGCGGTGAA CGACTCCATG GGCCACGGCG TGGGCGACGG GCTGCTGATC GAAGTGGCGC ACAGCCTCGT GGCGAGCGTG CGTCCCGAGG ATCTGGTGGT CCGGCTGGGC GGCGACGAGT TCGTGGTCCT GTGCCACGGG CTGGACAGGG CCGCGGTGAC GGGACTGGCC GAGCGGTTGC GGCAAGTGCT CGATCAGCCC TTCGAGGTCA CCGGCCGCAA GTGCCACATC TCGGCCAGCA TCGGCATCGC GATGTCCGAC AGCATCGGCG AGCTCGATCT GGTGCGGGCG GCCGACATTG CGATGTATGC GGCCAAGAAG AACGGCGGCA ACCGGGGCGA GCTGTTCCGT CCCTCGCTCT ACGAAGAGAC GACGCAGCTT GTCGAGCTTG ACAACGACCT GCGCAATGCG CTCGAGAACG GCCAGTTCCA TCTGGCCTAC CAGCCGATCT TCGCCCTGGC CCCCGGGACG GAGCGGCTGG TGGGCTTCGA GGCCCTGCTG CGCTGGGAGC ATCCGCACTA CGGCTCCCTT CAGCCCGGGG TCTTCATCCC GATGGCGGAA AAGCTGGGTC ACATCCATGT GCTGGGCGAC TGGGCGCTGC GCAACGCCCT GCGGCAGGTG CAGGCGTTCC GGTCGGCCGG CCCGGAGCTG GATCTGAAGA TCAATGTGAA CGTCTCGCCC CTGCAGCTGG CGAAGCCGGG GTTTGCCGCG CGTCTGACGG ACATGCTGGG GCAGATGCCG GACCTGCCGT CCCACGCGCT CTGCCTCGAG ATCACCGAGA CCTGCCTGAG CGACGAGGCC GTCTCCGAGG CTCTGGGCGC GATCCGGGCG CTGGGGGTTC AGGTCGCCAT CGACGACTTC GGCACGGGCT TCTCGTCGCT GGCCTGCTTG CGCCGCCTGC CCGCGGATAT CGTGAAACTG GACCGCGCCT TCCTGAAGAA TTCCAGCGCC GAGCCGCAGG ACGACAGGTT CTTCGCGGCG GTCAACAGCC TCATCCATGC GGTGGATCTG AAGGTGGTGC AGGAGGGGGT CGAGACGCCC GCACAGATCG ACTTCATTCG CGCCACGGGG GCCGATTTCG CCCAGGGCTT CCACCTCGCC CGCCCTCTCT CCATCCCGGC CGCCCTCGAC CTGATCTCGG CCTCGCGTCC GGGCCGGCCG CGCCCGCCGG ATCGGACGTG A
|
Protein sequence | MTAACDPSIC ETEPIATPGA IQPHGALVTA QADSGLVAHA SANLAEILGL PAAAALGRPI CDVIGHVNEV LLREARRRGS ETLESIGSLR RADGRLLHLH AFQSGDYMCL DLEAVRDEDD RLPPGLTQSV IETFSAAVTQ VELCELAVHG LRQVTGYDRV MAYRFGPDGH GEVIAEDLRP DLEPYLGLRY PASDIPQIAR ALYLRQRVGS IADSHYEPVP LLGHPGIDAL DLTHSALRSV SPIHLEYMRN MHTAASLTIG LADGDRLWGM LVCHNMTPRT AGPERRAAAG MIGQVVSLLL SRLGEVENAA EKLARQATLS TLVDRLSIGD TLAAAITAAD PLLLELVGAS GAVVRLEGQE LHFGRIPPAD AVRRALEILG PTRPPEILAI DDVTLRHPEL PELAAAGSGL LLLPLPSGDG DLIAWFRPEH VQTITWGGNP AEHGTWNPQT RRMSPRASFD AWKETVTGRS LPWTSIELAC AHDLGEAITA EMAQRTRAAL ARLRHYDPLT GLANRSFLQE CLANATLAGG PDVALLFIDL DRFKAVNDSM GHGVGDGLLI EVAHSLVASV RPEDLVVRLG GDEFVVLCHG LDRAAVTGLA ERLRQVLDQP FEVTGRKCHI SASIGIAMSD SIGELDLVRA ADIAMYAAKK NGGNRGELFR PSLYEETTQL VELDNDLRNA LENGQFHLAY QPIFALAPGT ERLVGFEALL RWEHPHYGSL QPGVFIPMAE KLGHIHVLGD WALRNALRQV QAFRSAGPEL DLKINVNVSP LQLAKPGFAA RLTDMLGQMP DLPSHALCLE ITETCLSDEA VSEALGAIRA LGVQVAIDDF GTGFSSLACL RRLPADIVKL DRAFLKNSSA EPQDDRFFAA VNSLIHAVDL KVVQEGVETP AQIDFIRATG ADFAQGFHLA RPLSIPAALD LISASRPGRP RPPDRT
|
| |