| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_4178 |
|---|
| Symbol | |
|---|
| ID | 5086350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009430 |
|---|
| Strand | + |
|---|
| Start bp | 222695 |
|---|
| End bp | 227128 |
|---|
| Gene Length | 4434 bp |
|---|
| Protein Length | 1477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640485740 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001170334 |
|---|
| Protein GI | 146280177 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.450705 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCTC TTTCCTGCTT TACCTCCCTC AGCCTCGACA GCGCCGTCTA TGCGACCGTG
GCAACCCTGG CCGGTTTCGT GCTGCTCGTC TCCTGGACCC TGCGTCAGGA CCATTTTTTC
GGCCGCAGAC ATTTTCTGGC CTGCCTTTTC GGCATGATCT GGTGGCTCGG CGCCGCATCC
CTCGAGCTTG CGACCCCGAC GCTTGCCTGC AAGCTTGCCT TCGCATCGGC AGCCTGGCCC
GCAATCACCC TCGTGCCGAT CTGCTGGTGC CTCTTTCTCG CCCACTACTG CTTCGGACTT
GGCGCGCGCC TGCGGCGCAC CGAAACCCTC GTCGTCACGG GACTTGTCGG TCTCGCGACG
CTCCTGGTCG CGACCAATCC CTGGCACGGG CTGTTCTACC TGCCGGGCAC GCGGCTCGGG
GTGCTCGACG GGCGGCCCTC CGCCATCTTC GAGCACGGGC CGCTGTTTCA TGCCCTGGCC
TCGCTGCTCT ACATCTTCCT CTCCTTGGCC GCAGCCATTG CGGCCGCGGC CGCCTTCCGG
GCTCCGCGCG CGATGCGGCC GGCCTGGATG ATGATGCTCT TCGGCACCCT TGTGCCGCTG
GCCGCCAACC TGGCCTATGT GACGCTCGAA ACCACCCTCT TCGGCTTCGA TCCGACGCCC
TTCGCCTTTG CCTTCGTCCT TCTGGTCTTC ACCTGGGCCA TCTATGCCAA CCGGTCCCTC
GATCTGACGT CCCAGGCACG CGACCTGATC TTCTTCAACC TCACCGATCC GGTGCTGGTG
CTGGATGCCG GGGGGCGGAT CGTCGGGATG AACCCGGCGG CGCAGGCGCT GATGCCGGAC
TTCGCGCCCG GCCAGAGCCC GTCGGACACC GGCCCGCTCG CGCGCCTTCG CCCCCTGCTC
GAGGAGAAGG AAGGGGAAGG AAGATGGCAG CGGGTGGAGA TCGGGGATCG TATCCTCGAG
ATCCGGCTGA TGCGCATGCG CAAGCCGCTG GGTGGTCGGC AGACCCTTCT CGGCGCCGTG
GTTCTGCTGA CCGACGTGAC CGATCTCCAT CGCAATGCGA TGCGTCTCGA GCTGGCGCTG
GGGCTGGCGC GCAACCAGCT TGCCGAAATC ACGCGCCTGC GGGAGATCTC CGAACGTCTC
GCACGCTCCG ATCCGCTTAC GGGTCTCGGC AACCGCCGCG CCCTTGATCT CGTCTTCGAA
GCCGCCCAGC CGGAGCATTC TTCGATCGGT CTCGCCCTGC TCGACATCGA TCATTTCAAG
CAGATCAACG ACCGCTTCGG CCATTCCGCG GGAGACCGGG TGCTGCGTCG CTTTGCGGAG
GCGGTCACCG AGGTGCTGCC GGAAGGGACA CACGCCTTCC GGGTGGGCGG CGAGGAATTC
CTGATCCTCT GCCCGGGCTT CGATATGGCC GCAATGGCCG GGCTCGTCGG ACAGGTGGCG
CACCAGGTGC AACAGAAGCC GCCCCTGCGC GTGCAGGATC ATTCTCCCCT GACCTTCTCC
GCCGGGATTG CCGTCCGACC CGAGGACGGC AGCAGTCTTG ACCAGCTCTA TGCCCGGGCC
GACGCCTGCC TCTATGAGGC CAAGCGGAGC GGACGCAACC GCTTCATTCC TTCTCCCGAA
CGCCCGGCCC TGGATGGGGC GGGGCCCCTC CGGGAGGGAT CCCGCGATCC TGCCGGAGAA
GATGTCCTCC TCGCGCGGCA CCTGTCGGAC CGGCAGTCGC GGATGGCTGT CCTGATGCGC
GAGCTGATGC GGGCCACGGG CCCCGAGGTG GATGGCGCCA TCGACCGGGC GCTTGCGGTC
ATGGGGGCGC AATGCGGGGC GGACCGGGCC TATGTGTTCC GGATCGAGGA GGGCATGTAT
CTCAGCAACA CGCATGAATG GTGCCGCGAC GGCATCAGGC CCGAACGACC CTCGCTGCAG
CGGCTGCCGA TCTCGCTCAT CGAGCCCTGG CTGCCGTTCC TGCAGGAGGA CGCCACGATC
GACATTCCCG ACGTCTCGGC CCTGGAGGAG AGGAACCCGG CCAAGGAACA TCTCGTCTCC
CAGGGCATCC AGGCCCTGGC CTTGGCTCCT CTCATGGACG GCCCGGCCCT TGCCGGTTTC
GTGGGCTTCG ATGCGGTCGG ACGGCGCGCG CCCTTCGATC CGGGGGAGAC GGCCATCCTG
CGCTCGCTCG CGGATGCGGT CGGGGCGGCC CTGGCCCGGC ACGGCGCCGA AACGATCGCC
GCGAGCGCCC AAGGCATCGC CCGGGCGGCC GAACGCGATC TCGCCCGGCT CGCCCATGTC
GCCGAGGTGA TGACGAACCT CGTCATCATC CTCGATACCG AACTGCGGAT CCTCTGGGTC
AATCGGGCCT TCGAAACCCA GACCGGCTAC CGGTTGGCCG ATGTGGCAGG GCGGGACTTC
GCGTCCCTGG TCCGGGGTCC GCAGACCGAT CCCGCAGCCG TGGCCGCGGT GCAGGCCGCC
GTCGAGCGGC GCGAGAGCCA CGAGGGCGAG ACCATCAATC ATGATGCCCG CGGACACCCT
TACTGGATCC ACTTCAACAT CCATCCGATG TTCGATCGGG ATGGCACCTA TCTCGGCTAT
GTGTCGGTCG AGACGGTGAT CAGCGACCGC AAGGCGCTCG AGCGCGAACT CGAGGCTCGC
AATGCCCTCA TCGCCGGTGT CCTGCGCACG AGCGTGTCGG CCATTCTCGC GACGGATACC
GCCGGGCGGG TGGTCTATGC CAATGCCGCG GCCCAGCATC TCCTGGCACT TACGCCCGCC
CCCGACGATC CCCAGGTCTT CCGCGTGCCC GACTGGCCGC TCGAGACGCT CGACGGCCAG
CCGGTCGGCG AGGCTGCCCT GCCCCCCGCC CTGGTGCGCA GATCCGGCGA GGACCAGCAT
GACCTGCGCT ATGCGGTCCG TCTGCCGGAG GGCGGCCGGC GCTTCCTCTC CATCAATGCA
GCCCCCCTGC CCCCGGCTCC GCACGGAGCC GAAATCGTGA TGTCGGTGAC CGACATCACC
GATGCCGAAG CCGTCGCCGA TCGGCTGCGC CAGCTTGCGG ACGAGGATCC ACTGACCGGC
CTTGCCAATC GCCGCGCGCT GAGCGCAGCC CTTGAGGCTC GGCTGGCGGC TGCCGCCGGC
CCTGCCCCCC TGGCCCTGAT CATGCTCGAC ATCGACAATT TCAAGTCCGT GAACGACACG
ATGCGCCATG AAGCCGGCGA CCGTGTGTTG TGCATCGTCG CCGAACGTCT GCGCGCCTGC
GCCGGCCGGG AGGATCTCCT CGCCCGGTTG GGGGGGGACG AGTTCATGCT GCTGGCCTCC
GGACTGGACC GGGAGGCGGC GGTGGTGCTC GCCGAACGGT TGCGGGACGC CATTGCCCGG
CCGATCCGGA TCGACACGCA GCCGATCAGG CTCACCGCCT CGGCGGGAGT TGCCTTGTGC
CCCGACCAGG GAACGGTGAT GCCCCTGCTG ATGACCGGGG CCGACATCGC CCTCCACGCC
GCCAAGCGGG CCGGACGGAA CCGGACCATC CTGCTCTCCC GGGAGCTGTT TGCGGCCGAA
GAACGACGCA GCGCCATCAC CCGGGCGCTG GACGGCCCCG CCCTCGACAG GCTGCGACTG
GTCTATCAGC CGCAGTTCTC CCTCGTGGGC AACGGCGGGC TGGCAGGCGT CGAGGCGCTC
CTGCGCTGGA CGGACCCGGT TCTTGGAGAC GTGTGCCCCG ACGAGTTCAT TCCGCTGGCC
GAGGAAGTCG GCCTGATCGT GACCATCGAC GACCGGGTCA TCGCGCAGGC GGCCCGCCAG
CTCCGGCACT GGGCGGCTTG CGGCTGGTAT CCCCGGCTGA GCATCAATGT CTCGGCACAG
AGCCTGTCCC GACGGGAATT CGCGCAGGAT ACCCTGCAGC TCCTGGCGGC GGAACGGATC
GACCCCCGCC AGATCACCCT CGAACTGACG GAAACCTCGC TCCTTGCGCC TTCCTCTGCC
GAGCAGAACA TCGCCTCCCT GCGCCGCAGC GGCATCGGCC TTGCCATTGA CGACTATGGG
ACCGGATATG CCTCCCTTTC CTATCTCCAC CGGCTGAGAG CCACGGAAAT CAAGATCGAC
CGCAGCTTCA TCGCGGGCCT CACGTCCGAA AATCCCCGGC ACAGCAGGAC ACTCATCCGT
GCCATCATCG GGCTTGCCGG AACGCTGGGG ATGAGCACGA CGGCCGAAGG GGTGGAGACC
GACGCACAAC GGGAGTGGCT CCGGCAGGCG GGGTGCGACC GCATTCAGGG CCATCTCCTG
AGTCTTCCCC TGGCGCGGGA CGAACTCGAG GCCCGGTTTC TCGAAGCCCC GCATCTCGAG
GACGCTCACG CACCGCTCCC ACATCCCCAT CGGCACCTGC TCGATGATCC CGCCCCTTCG
GGCAGCGTTC CCGAAGGAGA GCCGGATGGG CATGTCGAAA GAACTCTTCG ATAG
|
|---|
| Protein sequence | MDALSCFTSL SLDSAVYATV ATLAGFVLLV SWTLRQDHFF GRRHFLACLF GMIWWLGAAS
LELATPTLAC KLAFASAAWP AITLVPICWC LFLAHYCFGL GARLRRTETL VVTGLVGLAT
LLVATNPWHG LFYLPGTRLG VLDGRPSAIF EHGPLFHALA SLLYIFLSLA AAIAAAAAFR
APRAMRPAWM MMLFGTLVPL AANLAYVTLE TTLFGFDPTP FAFAFVLLVF TWAIYANRSL
DLTSQARDLI FFNLTDPVLV LDAGGRIVGM NPAAQALMPD FAPGQSPSDT GPLARLRPLL
EEKEGEGRWQ RVEIGDRILE IRLMRMRKPL GGRQTLLGAV VLLTDVTDLH RNAMRLELAL
GLARNQLAEI TRLREISERL ARSDPLTGLG NRRALDLVFE AAQPEHSSIG LALLDIDHFK
QINDRFGHSA GDRVLRRFAE AVTEVLPEGT HAFRVGGEEF LILCPGFDMA AMAGLVGQVA
HQVQQKPPLR VQDHSPLTFS AGIAVRPEDG SSLDQLYARA DACLYEAKRS GRNRFIPSPE
RPALDGAGPL REGSRDPAGE DVLLARHLSD RQSRMAVLMR ELMRATGPEV DGAIDRALAV
MGAQCGADRA YVFRIEEGMY LSNTHEWCRD GIRPERPSLQ RLPISLIEPW LPFLQEDATI
DIPDVSALEE RNPAKEHLVS QGIQALALAP LMDGPALAGF VGFDAVGRRA PFDPGETAIL
RSLADAVGAA LARHGAETIA ASAQGIARAA ERDLARLAHV AEVMTNLVII LDTELRILWV
NRAFETQTGY RLADVAGRDF ASLVRGPQTD PAAVAAVQAA VERRESHEGE TINHDARGHP
YWIHFNIHPM FDRDGTYLGY VSVETVISDR KALERELEAR NALIAGVLRT SVSAILATDT
AGRVVYANAA AQHLLALTPA PDDPQVFRVP DWPLETLDGQ PVGEAALPPA LVRRSGEDQH
DLRYAVRLPE GGRRFLSINA APLPPAPHGA EIVMSVTDIT DAEAVADRLR QLADEDPLTG
LANRRALSAA LEARLAAAAG PAPLALIMLD IDNFKSVNDT MRHEAGDRVL CIVAERLRAC
AGREDLLARL GGDEFMLLAS GLDREAAVVL AERLRDAIAR PIRIDTQPIR LTASAGVALC
PDQGTVMPLL MTGADIALHA AKRAGRNRTI LLSRELFAAE ERRSAITRAL DGPALDRLRL
VYQPQFSLVG NGGLAGVEAL LRWTDPVLGD VCPDEFIPLA EEVGLIVTID DRVIAQAARQ
LRHWAACGWY PRLSINVSAQ SLSRREFAQD TLQLLAAERI DPRQITLELT ETSLLAPSSA
EQNIASLRRS GIGLAIDDYG TGYASLSYLH RLRATEIKID RSFIAGLTSE NPRHSRTLIR
AIIGLAGTLG MSTTAEGVET DAQREWLRQA GCDRIQGHLL SLPLARDELE ARFLEAPHLE
DAHAPLPHPH RHLLDDPAPS GSVPEGEPDG HVERTLR
|
|---|
| |