| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_4133 |
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| Symbol | |
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| ID | 5086305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009430 |
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| Strand | + |
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| Start bp | 179812 |
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| End bp | 182439 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640485695 |
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| Product | hypothetical protein |
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| Protein accession | YP_001170289 |
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| Protein GI | 146280132 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.661275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGGG AACATGGATG GCGACTGGCC AGGTTCGCCT GCCTTGTTTT CGCCTTGACA
GCATTCTGGT ATGGACCTGC CCTTTTCGGG CTGTCTGTCG AGAGCGCACG GATCTGGTTC
GCAACGGCCC ATCTTGTCGG ACCGCTGCTG GCGGCCGCAC TCTGCGTCCT TGCCGCGCTG
CGCAGCGAGG GGGGTGACCG CGTCGTCTGG TTCAGCTTTG CGGCCGGTTC CGCGCTCTAC
ACGGGCGCCA ATGCACTCTT CGTGACAAAT ACCCTGACGG GTCAGGCGGT GGCCTTCCCC
TCGCTCGCAG AGGCGGCCTT CTTTGCAATG GGCGGGTGCT TTGCCTTCGG GATGTCGAAA
TATTCCAGCC GAAGCCTGCG CATCACGAGC GTCCAGATCT ACAATTTCCT GCTGATCTAC
TGCGCTCTTT TCATCGCCTG CCTGTTCCTG CTGCACTTCG ACATCAAGCA CTCCGTGCTG
GGGCCGGCCC AGACCGCGGT GGCTTATCTC TATCCCGCGC TCTGGTTCAG CGTTCTGGCC
TTTGGCATCC TCTCGCTGAT CTTCTTCGAC CACGGCAAGC GGTCGTTCCC GCTGTTCCTC
CTTGTTATCG GTATTGCCGC GGAAGCGGTG GCGGACTTCT GGTATGTCCG GGCAATAATG
AACGGCACCT ATACGCCGGG CGGGATGACG CTGCTGCTCT GGCTCAGCAC GACCGGCCTG
GTGGCACTGG CCGCGGCGGA ACACCTTGCG TTGATCCGGC GTGCGGGCCT GACCCAGTCC
GCGCTGCGGC GCCGGACGGA TGCCGGGATC GCCCAGGCCG CCCTCCCGGG CATTGTCATC
GCCATATTCA TGCTGTCGGG CAGCCTGTCC GGCGCCTTTG GGCGGAACTG GGAGTATGTG
GCTTTCTCCT CGGTCCTGGG GCTGATCTTC GCTGCGGTCG CGGCTTTGCG TGAGTATGCC
GTGATCAGAT CCCACGAGGC ACTGCGGACC GAGGCGGAGG AAAGCCGCGA AGAGGTCTCG
CTCAGCCGCC GCCGACTCGC GGCGGTGCTG GAAAGCACCA GCGATGCGGT GGTTGTCTTC
GATCGCAGTA TGCGGGTCGA GTATTTCAAC GAGAACGCGG TATCCGCCCT GGAAGGGGTT
GGCGCTCCGG GCCTGGGCGC CAGTTTCACC GAAATCTTCC CGGAGACGAG CTTTCCCGGC
GCGCTGGTGC GCTTTCGATC CGCCCAGTCC CGACAGGAGC CAATGGAATA TGATGCCCTG
CTCTCGGGCC CGGACCGCTG GCTATCCATA AACGGCTATC CGTCGAATGG GGGCCTCTCG
ATCTTCTTTC GGGACGTGAC GGAACAGCGC ACCGCGCGCG AGAGAATGGC GCATCTTGCG
CATCACGATC CGATGACCGG ACTGGCAAAC CGGATGAAGT TCAGCGAGGA GCTTCAACGA
TGCGTCTCTT TGGAGACGCC GGTTTCGGTG CTGCTGATAG ACCTCGACAA CTTCAAGGAC
ATGAACGACA CGCTTGGTCA CCCTCTCGGC GATGCTGTTC TCGTCGAGAT TGGCAGACGG
TTGCAGCAAC TGATGCGCCC CGGCAACCTG GCGGCCCGGC TCGGCGGGGA CGAGTTCGCC
ATGCTGATCT TCGGGCAACA GGACCGGATC GCCTTGGGCG CCATCGCGGA GCGGGTTCTG
GCCCGGATCA GCGCGCCGAT CGCGCTTCCA AACCAGACCG TGCGCGTCAC CGCCAGCATG
GGGATCGCAA TGGATGATGT GGCGAACCGG GCCGAGTTGG TCCGCACCGC GGATATCGCG
CTCTACGAGG CCAAGCGGGA CAACCGCGGC ACCTATCGGT TCTTCGACGG CGCGATGGAA
ATCAGGCTCA GAGAGCGCAC CGCGATCATT GCGGACCTCA CTGCAGCTTT GGGCAACAAC
GAGTTTGTGG TTCATTATCA GCCGCTGTAT GAACTGGCCT CGCACCGCAT CTGCGGCTTC
GAGGCGTTGC TGCGCTGGAC CCATCCGGTC CGGGGGCTGG TCTCTCCGGA AGTCTTCATT
CCGATTGCGG AGGACACCGG GCTGATCCAC CAGATCGGAG CTTGGGTGCT GCGAACCGCC
TGCACGGCAG CGGCGGATTG GCCTGCCGAC GTCCGCATTG CGGTGAACCT GTCGCCCCGT
CAGTTCAGGG ATCTCGGTTT GCCGACGATG GTCGCTCGCG TTCTTGAGGA GACCGGGCTG
CGCCCGAACC GGCTCGAGCT GGAGGTCACC GAGGCGGCGC TGCTCGATGA CAGCGGGAGC
AATCTGGACA TCTTCGCGCA GCTGAACCGG ATGGGCATCC GTATCGCCCT CGATGATTTC
GGCACCGGCT ACTCTGCGCT CAGCTACCTG CAGAAATTCC CCTTCGCCAA GCTGAAGATC
GACCGTTCCT TCATCACCGG GCTGCCGGAC AGCGAGTCCA GCATGGCCAT CGTCTCCGCG
ATCTGCAGCA TGGCGCATGC CCTCTCCATC CGCGTCACCG CGGAGGGAGT CGAAACCCGC
GACCAGTTCG ACTGGCTCCA GACCCGGTGC AATGAGATCC AGGGGTATCT GATAAGCCGT
CCGGTCCCTG CGGGCCGGAT CCCGGACCTG CTGGCAGGGA AAAGGTAA
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| Protein sequence | MTREHGWRLA RFACLVFALT AFWYGPALFG LSVESARIWF ATAHLVGPLL AAALCVLAAL
RSEGGDRVVW FSFAAGSALY TGANALFVTN TLTGQAVAFP SLAEAAFFAM GGCFAFGMSK
YSSRSLRITS VQIYNFLLIY CALFIACLFL LHFDIKHSVL GPAQTAVAYL YPALWFSVLA
FGILSLIFFD HGKRSFPLFL LVIGIAAEAV ADFWYVRAIM NGTYTPGGMT LLLWLSTTGL
VALAAAEHLA LIRRAGLTQS ALRRRTDAGI AQAALPGIVI AIFMLSGSLS GAFGRNWEYV
AFSSVLGLIF AAVAALREYA VIRSHEALRT EAEESREEVS LSRRRLAAVL ESTSDAVVVF
DRSMRVEYFN ENAVSALEGV GAPGLGASFT EIFPETSFPG ALVRFRSAQS RQEPMEYDAL
LSGPDRWLSI NGYPSNGGLS IFFRDVTEQR TARERMAHLA HHDPMTGLAN RMKFSEELQR
CVSLETPVSV LLIDLDNFKD MNDTLGHPLG DAVLVEIGRR LQQLMRPGNL AARLGGDEFA
MLIFGQQDRI ALGAIAERVL ARISAPIALP NQTVRVTASM GIAMDDVANR AELVRTADIA
LYEAKRDNRG TYRFFDGAME IRLRERTAII ADLTAALGNN EFVVHYQPLY ELASHRICGF
EALLRWTHPV RGLVSPEVFI PIAEDTGLIH QIGAWVLRTA CTAAADWPAD VRIAVNLSPR
QFRDLGLPTM VARVLEETGL RPNRLELEVT EAALLDDSGS NLDIFAQLNR MGIRIALDDF
GTGYSALSYL QKFPFAKLKI DRSFITGLPD SESSMAIVSA ICSMAHALSI RVTAEGVETR
DQFDWLQTRC NEIQGYLISR PVPAGRIPDL LAGKR
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