| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_4101 |
|---|
| Symbol | |
|---|
| ID | 5086274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009430 |
|---|
| Strand | + |
|---|
| Start bp | 153746 |
|---|
| End bp | 155914 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640485664 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001170258 |
|---|
| Protein GI | 146280101 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.965422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.2163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGGG TGGCGTCAGA TGAAGACGAG ATCGACCTGG GCCGGATCCT GGCCCAGCTC
TGGGCGGGAC GCTTCCGGAT CGCGGGCTCC ACAGCGGCAG CGGCCGTCCT GGCGCTCGTT
CATCTCGCCG ACACGCCCCC CACCTTTCGG GCCGAGGCGC TCCTGCAGCT CGAAGAGAAG
GCGGCACAGG CCCTGCCGGC AGCGCTTTCC GACATTGCCG GTTTGGAGCC GCGCATCGCC
GCCGAGATCG AGATCCTGCG CTCGCATTCG GTGCTGGCGG AGGCGGTGGC GGCTCATCGT
CTCGATCTCC AGGCCCTGCC GGTCCAGGCG CCTGTCCTGG GCCATGCGGT GGCCTCGGGG
CGACTGCCGC TTCCCGATTC CGGAATTCTG GGCGCCTATG ATCGCGGTGA TGGACGGATC
CTGCTCGACC TGCTGGAGGT CCCTTCCGAG TGGGTCGATG AATGGATCCG GCTGACGGCG
ACGGGGAACG GGGGCTTCAC GCTTTCCCTG CCGGATGGAC GTCGGCTCGA CGGGCAGGTT
GGCGAGCCGC TCCTGTGGCC GGAAGCGGGG TTCGGCCTGC GGATCGTCGG GCTGGAGGCA
CCCGCAGGGC GACAATTCCG GCTTCGCCGG CAGGACGAGA TCGGGGCCAT CGAGGCATTG
CGCGGGCGGC TTTCGGTCAG CGAGCGCGGG CGGGGGGCCC TGATCCTCGA CGTGACCCTG
ACGGGCCCGG ATCCTGTCGA GGCCCAAGCT GCGCTGGCCG CGGTCACCGA CGCCTATCTG
CGGCAGAACA GGGGCCGGAG CGCGGCAGAG GCGCAGAGCA GTCTGGATTT CATCGAGCAC
CAGCTTCCCG GGGCGCGCGA AGCGGTTGCA AGGGTCGAGG ACCGGCTCGA GGCCTATCGT
CAGGCCCAGC ACACGCTCGC CCCTGACCTT GAAAGCCTGA GCCTTCTGAA CGAGATCCGT
GCGGCCGAGA CGGAGCTGCG CGAGCTGTCG GGGAAAGAGG AGGATCTGGC TCGTCGTTTC
ACACCCCTGC ATCCGGCCTA CCAGAAGCTC CTCGCCGCAC GGGCGCGGGC GGAGGACCGG
CTGGCCGGGT TGCGCCAGGA GGCGGCCGGT CTTCCGGAAA CCCAACGGGG TCTCTTCAAC
CTTTCACGTG AACTGGACGT TGCTCGCCAG GTTCATCTGG ACCTGCTGAA CCGGGCGCAG
GAACTGCGCG TCCTCACGGC GAGCACGCTC GGCAATGCCC GCCTCCTCGA TGCGGCCCGG
GCAAGACCCG CTCCCGTGGC CCCGCGACGG GGACGGGTGC TGGCACTTGC CCTTCTTCTC
GGCGCGCTTG GCGGCGCAGG GTATGTGCTC GGGCGCAACT GGCTGCAGGC GGTCATCCTC
GGCCCCGAGG ATCTCGACCG GCTGGGATTG CCGGTCTATG CCACCGTGCT TCTTGCGCCG
CAGGCGGTGC GTCAGCGAGG AGACCGCCGT CCCTGGCCGA TCCTGGCCCT GACCGATCCC
GATTGCGTCA CCCTGGAGGG GATCCGGTTG CTGCGGGCGG GGCTGCACTT CGGGCGTGAG
GCAGCACGCA GCCGCTCGGT CGGTTTCACC TCGCCATCCT CCGGAGCGGG CAAGTCCTTC
CTCGCAGCCA ACCTTGCGGT GGTTGAGGCA CAGGCGGGTC AGCGGGTCTG CCTCGTCGAC
ACCGACCTGC GGCGGGGGGA TCTCCGGCGC TACTTCGGGA TGTCGAGGGG AACGCCGGGG
CTGTCGGACT ATCTCTCTGG CTCGGCGGCC GTCGACGATC TTCTTCGCCC GGGGCCGGTG
GAGGATCTGA TGGTGCTGAC CGCAGGCCGA CTTCCACCAC ACCCTTCCGA GCTTCTCCTG
CGGCCGGCCT TCGCCCACCT CGTCGCGGAA CTCGACCGCC GCTTTGACCT TGTGATCTTC
GACATGCCCC CGGCGCTCGC CGTCACCGAC GCGGCCGTGA TCGGTCGCAC GATGGGGATC
ATGCTGGCGG TCCTGCGCCA CGCCATCACC GAGCGCGAGG AGGTGGAGGT CATGATCCGC
CAGATGCAGG GCGCCGGCGT GACACTCGGG GGCGCGGTGA TCAACGGCTA TCGGCCCTGC
GGCCGCCGAG GCGCCTACGG CTATCGCTAC GACGACAGCT ACAGCTATCG TTCCGGACAG
GAGGCCTGA
|
|---|
| Protein sequence | MARVASDEDE IDLGRILAQL WAGRFRIAGS TAAAAVLALV HLADTPPTFR AEALLQLEEK
AAQALPAALS DIAGLEPRIA AEIEILRSHS VLAEAVAAHR LDLQALPVQA PVLGHAVASG
RLPLPDSGIL GAYDRGDGRI LLDLLEVPSE WVDEWIRLTA TGNGGFTLSL PDGRRLDGQV
GEPLLWPEAG FGLRIVGLEA PAGRQFRLRR QDEIGAIEAL RGRLSVSERG RGALILDVTL
TGPDPVEAQA ALAAVTDAYL RQNRGRSAAE AQSSLDFIEH QLPGAREAVA RVEDRLEAYR
QAQHTLAPDL ESLSLLNEIR AAETELRELS GKEEDLARRF TPLHPAYQKL LAARARAEDR
LAGLRQEAAG LPETQRGLFN LSRELDVARQ VHLDLLNRAQ ELRVLTASTL GNARLLDAAR
ARPAPVAPRR GRVLALALLL GALGGAGYVL GRNWLQAVIL GPEDLDRLGL PVYATVLLAP
QAVRQRGDRR PWPILALTDP DCVTLEGIRL LRAGLHFGRE AARSRSVGFT SPSSGAGKSF
LAANLAVVEA QAGQRVCLVD TDLRRGDLRR YFGMSRGTPG LSDYLSGSAA VDDLLRPGPV
EDLMVLTAGR LPPHPSELLL RPAFAHLVAE LDRRFDLVIF DMPPALAVTD AAVIGRTMGI
MLAVLRHAIT EREEVEVMIR QMQGAGVTLG GAVINGYRPC GRRGAYGYRY DDSYSYRSGQ
EA
|
|---|
| |