| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3997 |
|---|
| Symbol | |
|---|
| ID | 5086172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009430 |
|---|
| Strand | + |
|---|
| Start bp | 23232 |
|---|
| End bp | 24710 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640485556 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001170156 |
|---|
| Protein GI | 146279999 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3524] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.740683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.827295 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGGTC ATGAACGAAC CAGATCGAGC GGGACAGCCT TCTTGAACGC CACCAAGACG
ACCGCACCTC GCCCTGATGA GCCGCCACTG CGAGCCTCAC CCACTACATC TAGTGGGGCT
CCGGCTCGTG GGGTGGACGC CGGTCGTGAC ATCGGTAACT TCACCGTGAG CCGTGCGGAG
GGTGAGGCTG CCGCCGGTGC TGAGGACTCG TCTCCTTCTC CTTCTCCTTC TCCTTCTCCT
TCTCCTTCTC CTTCTCCTGC GACGCGGGAA CGGGGCGTTG CCGTGCCTCC AAGGCGCCGG
TCGGAAGCTG TGCCGGAGGT CGGGTTCGCG TCGCGCACGC CACCAGTTGC CCCTGCGGCT
ACCGCACGGA TGCGGCATCG CGGTATGCTG GCCAGTTTCG TCGGGATTGT CATCGTGCCG
ACGCTGATCG CGTCAATGTA TCTATTTTTG GTGGCCGACG ATCAGTATAC ATCGACCGTC
GGCTTTGCCG TTCGATCCGA AAATTCGGCA TCTCCGCTGG ATCTGCTTGG CGGAATTGGC
GGTCTCTCCG GGATGACCGC ATCCGGCCCG GCTTCGGACA CGGATATCCT CTATCAGTTC
ATTCAGAGTC AGGCACTTGT ACAAAGCATA AGCCAACGAC TCGATCTCAG AACCGTCTAT
TCCAAACCTG CCTTTGATCC GGTATTCGCG CTCCGACGAA ATGGAGAGAT CGAGGACCTC
GTCGAGTACT GGAAGCGGAT GGTCAGGATC AGTTATGACA GTACCACCGG ATTGATCGAG
CTGAGGGTCC ACGCGTTCGA ACCGAAGGAT GCGCAAGTCA TTGCGCAGTT GATCCTCGAC
GAGTCGACCC AGATGATCAA CGATCTGTCC GTGATCGCTC GAACCGACGC TACACGCTAT
GCACAAGAGG AGCTTGATAA GGCGATTGCA CGACTTCGCG AGCGGAGAGT GGCCGTCACG
GAATTCAGGT CGCGCACTCA GCTTGTTGAT CCCTCGGCAG ATATCGAGGG TCAGATGGGC
CTGCTCTTCA GCTTGCAGGA GCAACTTGCA GCGGCGAGTA TCGATATCAG CTTGCTCCGG
CAGACCACCC AGCCAACTGA TCCGCGCATC GCACAGAACG AGCGGCGGAT TGGAGTGATC
GAACAACTGA TCGACAAGGA GCGTGAGAAG TTCGGGATGG GGGGAAGTGC CGACGGGAAC
GAGAATAGCT ATTCCGCGCT TGTCGGTGAG TACGAGAGGC TGACCGTCGA TCGAGAATTC
GCGGAGAAAG CGTATCTCGC GGCTCTGGCA AATTATGACG CGGCCTTGGC TGATGCGCAA
CGCAGGACGC GTTACTTGGC AGCCTATATT CGTCCCACGT TGGCAGAGAC ATCTCTGTAT
CCGCAGAGAG GGCTGCTTAG CGTTCTGACA GGCGGCTTCC TGCTCCTCAT CTGGTCGATA
GGTTTGCTGA TCTATTACAG CGTCCGTGAT CGGCGATAG
|
|---|
| Protein sequence | MFGHERTRSS GTAFLNATKT TAPRPDEPPL RASPTTSSGA PARGVDAGRD IGNFTVSRAE
GEAAAGAEDS SPSPSPSPSP SPSPSPATRE RGVAVPPRRR SEAVPEVGFA SRTPPVAPAA
TARMRHRGML ASFVGIVIVP TLIASMYLFL VADDQYTSTV GFAVRSENSA SPLDLLGGIG
GLSGMTASGP ASDTDILYQF IQSQALVQSI SQRLDLRTVY SKPAFDPVFA LRRNGEIEDL
VEYWKRMVRI SYDSTTGLIE LRVHAFEPKD AQVIAQLILD ESTQMINDLS VIARTDATRY
AQEELDKAIA RLRERRVAVT EFRSRTQLVD PSADIEGQMG LLFSLQEQLA AASIDISLLR
QTTQPTDPRI AQNERRIGVI EQLIDKEREK FGMGGSADGN ENSYSALVGE YERLTVDREF
AEKAYLAALA NYDAALADAQ RRTRYLAAYI RPTLAETSLY PQRGLLSVLT GGFLLLIWSI
GLLIYYSVRD RR
|
|---|
| |