| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3963 |
|---|
| Symbol | |
|---|
| ID | 5086139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | + |
|---|
| Start bp | 868804 |
|---|
| End bp | 870330 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640485522 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001170122 |
|---|
| Protein GI | 146279964 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.81037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.136891 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCAT CCGGAATATG CTGGGTCTTG GCCATAGCTG GGTCTCCTCC GTGGTGTGGT
TCGCAAAACC ACCATAGAGA CCTGTGCCCC GGTTATGGCC GCCCGCTGCG CGATCCGGGG
GCTTCGCGCG CGGCCATAAC CTTTCGCTGC GCATCATTCC CAACATGCTA CGGGCTGGAA
TACACCTTCC GCCTGCGTCC GGGCGTCAAG TTCCACAGCA CCGACTTCTT CACGCCCACG
CGCGACCTGA ACGCCGATGA CGTGATCTTC TCGTTCCTGC GCCAGGGCGA TGAGGAAAAC
CCGTGGCACC AGTATGTGAC CGGGATCACC TACGAATATT ACAGCGGCAT GGAAATGCCG
ACCGTGATCA AGGAGATCCA GAAGGTCGAT GACCTGACGG TCAAGTTCGT CCTGACCCGT
CCCGAGGCGC CCTTCCTCGC GAACCTCGCG ATGGACTTCG CCTCGATCCT GTCGAAGGAA
TATGCCGACA AGCTCGAGGC CGAGAACCGC AAGGAAGACC TCAACAACGC CCCCGTCGGC
ACCGGCCCGT TCAAGTTCGT GGCCTACCAG AAGGACGCGG TGATCCGCTA CCAGGCCCAT
GACGACTACT GGGCCGGCCG CGAGAAGATC GACGACCTGA TCTTCGCCAT CACCCCCGAC
CCGGCGGTGC GCATGCAGAA GCTGCAGGCC GGCGAATGCC ACATCATGCC CTATCCGGCG
CCGGCCGACA TCGAGGCGCT GAAGGCCGAT CCGAACCTGC AGGTGATGGA ACAGCCGGGC
CTGAACGTGG CCTATCTCGC CTACAACACC ACCATCGCGC CCTTCGACAA CCCCGATGTG
CGGCGCGCGC TCAACATGGC GCTGAACAAG GAGGCTGTCC TTGACGCCGT GTTCCAGGGC
ACGGGGCAGG TGGCCAAGAA CCCGATCCCG CCGACCATGT GGGGCTACAA CGACGCGGTC
GAGGAGAATC CCTACGATCC CGAGGCCGCC AAGGCGCTTC TGGCCGAGGC CGGGGTCTCG
GATCTCTCGA TGGAGATCTG GGCCATGCCG GTGCAGCGGC CCTACATGCC GAACGCGCGC
CGCACGGCCG AGCTGATGCA GGAAGACCTG GCCAAGATCG GCGTCAACGT CGAGATCGTC
TCGTACGAGT GGGGCGAGTA TCTGAAGAAA TCGACCGACC CGGCCCGCAA GGGCGCGGTG
ATCCTTGGCT GGACGGGCGA CAACGGCGAC CCGGACAACT TCCTCGGCGT GCTTCTGGGC
TGCGCGGCCA CCGGCGACGG CGGCGCGAAC CGGGCCCAGT GGTGCAACAA GGAGTTCGAC
GACCTGATCC AGAAGGCGAA GGTCACGGCG GATCAGGACG AGCGCGCCAA ACTCTACGAA
GAGGCGCAAC TCGTCTTCAA GCGCGAGAAC CCCTGGGCCA CCATCGCCCA TTCGACGGTC
TTCATGCCGA TGTCGAAGAA GGTCTCGGGC TATGTGATGA ACCCGCTGGG CAAACACGGC
TTCTCGGGCG TCGATATCGA AGAGTGA
|
|---|
| Protein sequence | MRASGICWVL AIAGSPPWCG SQNHHRDLCP GYGRPLRDPG ASRAAITFRC ASFPTCYGLE
YTFRLRPGVK FHSTDFFTPT RDLNADDVIF SFLRQGDEEN PWHQYVTGIT YEYYSGMEMP
TVIKEIQKVD DLTVKFVLTR PEAPFLANLA MDFASILSKE YADKLEAENR KEDLNNAPVG
TGPFKFVAYQ KDAVIRYQAH DDYWAGREKI DDLIFAITPD PAVRMQKLQA GECHIMPYPA
PADIEALKAD PNLQVMEQPG LNVAYLAYNT TIAPFDNPDV RRALNMALNK EAVLDAVFQG
TGQVAKNPIP PTMWGYNDAV EENPYDPEAA KALLAEAGVS DLSMEIWAMP VQRPYMPNAR
RTAELMQEDL AKIGVNVEIV SYEWGEYLKK STDPARKGAV ILGWTGDNGD PDNFLGVLLG
CAATGDGGAN RAQWCNKEFD DLIQKAKVTA DQDERAKLYE EAQLVFKREN PWATIAHSTV
FMPMSKKVSG YVMNPLGKHG FSGVDIEE
|
|---|
| |