| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3882 |
|---|
| Symbol | rpsA |
|---|
| ID | 5085430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | + |
|---|
| Start bp | 781660 |
|---|
| End bp | 783345 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640485441 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_001170042 |
|---|
| Protein GI | 146279884 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.237416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.848573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGCCA AAGCAACCAT GGAAGAATTT GAGGCCCTCC TGAACGAGAG CCTCCAGATC
GACACCCCCC AGGAGGGTTC GGTCGTGAAG GGCCGCGTGA TCGCCGTCGA GGCGGGCCAG
GCCATCATCG ACGTCGGCTA CAAGATGGAA GGCCGCGTCG ACCTGAAGGA ATTTGCCGAC
ATGTCCGGCT CGGTCGATCT GTCGGTCGGC GACGAGGTGG AGGTCTATCT CGATCGCGTC
GAGAACGCCC GGGGCGAGGC TGTCATCAGC CGCGACAAGG CCAAGCGCGA GGAAGCCTGG
GACCGTCTCG AGAAGGCCTA TGCCAACGAG ACCCGCGTCG AGGGCGCGAT CTTCGGCCGC
GTCAAGGGCG GTTTCACCGT CGATCTCGGC GGCGCCGTGG CCTTCCTGCC CGGCTCGCAG
GTCGACGTCC GTCCGGTGCG CGATGCCGGC CCGCTGATGG GCATGAAGCA GCCGTTCCAG
ATCCTGAAGA TGGACCGTCG CCGCGGCAAC ATCGTCGTGT CGCGCCGCGC CATTCTGGAA
GAGTCGCGTG CGGAACAGCG CGCCGAGGTC ATCTCGAACC TCTACGAAGG CCAGACCGTT
GACGGCGTCG TCAAGAACAT CACCGAATAC GGTGCGTTCG TCGACCTCGG CGGCGTGGAC
GGCCTGCTGC ACGTCACCGA CATGGCGTGG CGCCGCGTGA ACCACCCGTC CGAGATCCTG
TCGATCGGCG AGACCGTCAA GGTCCAGGTC ATCAAGATCA ACAAGGAAAC CCACCGTATC
AGCCTGGGCA TGAAACAGCT CCAGTCGGAT CCGTGGGACG CGGTGGAAAA GGCCTACCCG
ATCGGTTCGG TCCACAAGGG CCGCGTGACC AACATCACCG ACTACGGCGC GTTCGTCGAG
CTGGAAGCCG GTGTCGAAGG CCTGGTCCAC GTCTCGGAAA TGAGCTGGAC CAAGAAGAAC
GTGCACCCCG GCAAGATCGT CTCGACCTCG CAGGAGGTGG ACGTCATGGT GCTGGAGATC
GACAGCGCCA AGCGTCGTGT CTCGCTGGGC CTGAAGCAGA CCATGCGCAA CCCGTGGGAA
GTCTTCGCGG AAACGCACCC GGTCGGCACC CAGATCGAGG GCGAGGTGAA GAACATCACC
GAGTTCGGCC TGTTCGTCGG TCTCGAGCAC GACATCGACG GCATGGTGCA CCTCTCGGAC
CTCAGCTGGG ACCAGCGCGG CGAGGAAGCC ATCCAGAACT ACCGCAAGGG CGACGTCGTG
AAGGCGGTCG TGACCGAGGT GGACACCGAC AAGGAGCGGA TCTCGCTCTC GATCAAGGCG
CTCGGCGACG ACACCTTCTC GGAAGCCATC GAGGGCGTGA AGCGCGGCTC GGTGATCACC
GTGGCGGTGA CGGCGATCGA GGACGGCGGG ATCGAGGTGG ACTACAACGG CATGAAGTCG
TTCATCCGCC GTTCGGACCT GTCCCGCGAC CGCGCCGACC AACGCCCCGA GCGTTTCCAG
GTCGGTGACA AGGTCGATGT GCGCGTGACC AACGTGGACG CCAAGACCCG CCGCCTGGGC
CTGTCGATCA AGGCGCGCGA GATCGCGGAA GAGAAAGAGG CCGTCGAACA GTATGGCTCG
TCCGATTCGG GCGCGTCGCT GGGCGACATC CTCGGCGCGG CGCTGCGCAA CAGCGAGCGC
GGCTGA
|
|---|
| Protein sequence | MCAKATMEEF EALLNESLQI DTPQEGSVVK GRVIAVEAGQ AIIDVGYKME GRVDLKEFAD
MSGSVDLSVG DEVEVYLDRV ENARGEAVIS RDKAKREEAW DRLEKAYANE TRVEGAIFGR
VKGGFTVDLG GAVAFLPGSQ VDVRPVRDAG PLMGMKQPFQ ILKMDRRRGN IVVSRRAILE
ESRAEQRAEV ISNLYEGQTV DGVVKNITEY GAFVDLGGVD GLLHVTDMAW RRVNHPSEIL
SIGETVKVQV IKINKETHRI SLGMKQLQSD PWDAVEKAYP IGSVHKGRVT NITDYGAFVE
LEAGVEGLVH VSEMSWTKKN VHPGKIVSTS QEVDVMVLEI DSAKRRVSLG LKQTMRNPWE
VFAETHPVGT QIEGEVKNIT EFGLFVGLEH DIDGMVHLSD LSWDQRGEEA IQNYRKGDVV
KAVVTEVDTD KERISLSIKA LGDDTFSEAI EGVKRGSVIT VAVTAIEDGG IEVDYNGMKS
FIRRSDLSRD RADQRPERFQ VGDKVDVRVT NVDAKTRRLG LSIKAREIAE EKEAVEQYGS
SDSGASLGDI LGAALRNSER G
|
|---|
| |