| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3731 |
|---|
| Symbol | |
|---|
| ID | 5085597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | - |
|---|
| Start bp | 633098 |
|---|
| End bp | 636622 |
|---|
| Gene Length | 3525 bp |
|---|
| Protein Length | 1174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640485294 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001169903 |
|---|
| Protein GI | 146279745 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA CGAAACTCAA GAAGTTCGCT CAGTTTGCAC GGCGCGCGCT CATCGAACAG
GTCGCAGCAA GGCTGGAGGC CGTCCGCGGG GAAGGCTCTG CAGCTCAGCG CGAGCATCCG
GTGGCGTTCA AGAAGCTCCA GGCGAGCATC GCCGAGCACG GTGCTGACGA TGTCATCGAG
CGGGTCGCCT ACATCTGGTT CAACCGCTTT ACCGCCCTGC GCTTCCTTGA TGTGAACGAA
CTCAGCGCCG TTCGCGTAGT CTCTCCTTTG CCTGGGCAGT TCCAGCCTGA GATCCTTGCG
GATGCGAAGG CCGGGAACAT CAACGAACAG CTCGTGCCTG AGGCGACCCG CCGCAAGGTC
CGCGACCTGC TGGAGGGGCT GACCCCCAGC CAGGATCCTC AGGCCGAGGC GTATCGACTG
CTTCTCGTCG CCATCTGCAA CTCCTGGCAG ACCACCATGC CGTTCATGTT CGAACGGATC
GATGACTACA CCGAGCTTCT GCTGCCCGCC GACCTGCTCT CCAACGCCTC GATCCTCGCC
TATCTGCGCG AGGCCATGAC GCCGGACGCC TGTCAGGATG TCGAGATCAT CGGCTGGCTC
TACCAGTTCT ACATCTCGGA GAAGAAGGAT CAGGTCTTCG CCGCGCTGAA GAAGAACAAG
AAGATCGAGG CCGAGAACAT CCCGGCCGCG ACCCAGCTCT TCACCCCGCA CTGGATCGTC
AGGTATCTGG TCGAGAACTC CCTTGGGAGG CTCTGGCTGC TGAACCGGCC GGGGTCCAAG
CTGGCCGAGC GGATGGACTA CTACATCGCG CCGAAAGAGC CCGAGACGGA CTTCCTGAAG
ATCGGCAAGC CCGAGGAAAT CAAGGTCTGC GATCCGGCCT GCGGGTCGGG GCACATGCTG
ACCTATGCCT TCGACCTGCT CTACGCGATC TACGAGGAAG AGGGGTATGA GGCCGACAAG
ATCCCCGCGC TGATCTTGGC GAACAACCTG ACGGGGGTCG AGATCGACGA CCGCGCGGGG
GCGCTGGCGG CCTTTGCGCT GGCGATGAAG GCGGCGGCAA AGCTGGGGCG GCGGCGGTTC
CTGCGGATGG AGGCGAAGCC TGACATCTGC GTTTTGCAGG ACGTGAAGTT CACCGACGCG
GAATTGCGGG ACGTGGCCGC CGTGGTCGGC AAAGACCTCT TCACCGACGA ACTGCGCGAA
ACGCTGGGGC AGTTCGAGCA GGCCAAGAAC TTCGGCTCGC TGATCGTGCC GAAACTGCGC
GACCCAGCCG AGACACTGCG AGTGGTGGTG GCTCGGGATT TTGACGCCGA CCTGCTGCTG
CGCCCGGTTC TGGAGCGCCT TGAAAAAGTG CTGTGCATGG CCGAGGCGCT GTCGCCGAAG
TATCATGTTG TGGTGGCCAA CCCCCCGTAT ATGGGCAGCA AAGGGATGAA CAAGACCCTC
GAAAGCTGGG CCAAGAAACA CTTCAAGGAT AGTCGCGCGG ACCTGTATGC GATGTTCATG
GAAAGGTCAT TGGCGCTTTG TGTGCGTCAT GGCTTCACTG CAATGATCAA CATGCAGTCT
TGGATGTTTC TTTCAACGTT TGACAGCTTG AGAAGCAAAC TCCTGACGCA GAACGCCATT
GTAAGCATGG CTCACCTGGG GGAGCGAGGG TTCGATACGA TTGGGGGCGC CGTCGTCTCA
ACGACGGCTT TCGTATTGGG CAAGGCCTAC AGCCCTAGAA CGGAAGGGGT TTTTCTCCGC
CTCGTTTCTG GTCGCAACGA GGCAGAAAAA TCGACTGCGG CACGCGCTGC CGTGAGCGGT
GTAAACTCAG ATGTGAAATT TTGTTCTTCA GCTGCGGACT TCCAGAAGCT TCCGGGTAAT
CCAATTGCGT ATTGGGCATC GGAAGCGTTT CTGCGCCTAT TTGATGAAGG CAAGCCCATC
ACAGACTTCG TATCGTCTCG CGATGGCCTA ACCACTGGGG ACAACGAAGC TTTCATCAGG
TATTACTGGG AGCCAGCCTT TGAAAGCGTT GGGTTTGGAT ACGCTGACGC AAAAGACTTC
TGGAAATCAG GTCGGAAATT CGCCCCCCTT ATAAAAGGTG GCTCATATCG GAAATGGTTT
GGAAACCTTT CCAATGTAAT CACCTATGAC AAACAGCACT ATGAAGTGCT TGCAGTGAGC
GGAAACAAAC TTCCCTCAAG AGAGAAGTAT TTTCAACGAA ACCTGAACTG GACTCGTATT
TCTTCGCCAA GCGGATCGTT TCGATATACC GAACCTGGTT GCATCTTCGA AAGCGCAAGT
CTTTGCACAT ATTCTGACTC AGATCAGGAT ATGTTTTATG CTCTGGCAGG TGCGAACAGC
TGTATCACAA TTCCACAGCT TGATCTAGTG AACCCAACTA CGAACCTGCT GTCCGGTTAT
TTTGACATGC TTCACTTGCC GGAACATGAC GCCGCAGCTC GCTCAATAGC AGCAGGAAAT
GCCAAGCAAC TTGTGAGCTT GGCCAAATCC GACTGGGACG CCTACGAAAC CTCTTGGGAT
TTCACTACGC TCCCGCTGCT CTCGCCCGAT CACCGGGCCG GGACGCTTGA GGCCACCTTT
GCACGCCTGC GCGCCCACTG GCAGGGCATG ACAGACGAGA TGAAGCGGCT CGAGGAAGAG
AACAACCGCA TCTTCATCAA CGCCTATGGT CTGCAGGACG AGCTGACCCC CGAAGTGCCG
ATCAAGGAGA TCACCCTCAC CTGCAACCCC GCCTATTCAA TCAGCGGCGA CAAGACCGAA
ACCGAGCGCG AGGACGCGCT TCGCGTTTGC ACGATGCAGG AGTTCCTGAG CTATGCCGTG
GGCTGCATGT TCGGCCGCTA CAGCCTCGAT GCGCCGGGCC TGATCCTCGC CAATCAGGGC
GAAACGCTGG CCGAATACCT CGCCCGCGTG CCCGAGCCGA GCTTGCTGCC CGACGAAGAC
AACGTCATCC CCGTGCTGTC GGAGGAGTTC GAGAGCTGGT TCCCCGATGA CATCGCGGAC
CGCTTCCGCA AGTTCCTGCG CGTGACCTTC GGCGATGCGT ATTTCCGCGA GAACCTCGCC
TTCATCGAGG CGCAGGTGGG CGACATCCGC AAATACTTCT CAAAGGCGTT CTACGACGAC
CACGTGAAGC GCTACAAGAA GCGTCCGATC TACTGGATGT TCTCCAGCCC CAAGGGCACG
TTCCAAGCGC TGATCTACAT GCACCGCTAC CGGCCCGACA CCGTCTCGGT CCTGCGGAAC
GAGTATGTGG TCGAGTTCAT CCGCAAACTC GAGGCCGAGC GTGCAAAGCT GGCAAAGCAG
TCCGACGACC CCTCGGCCAC GCAGGCACAG CGCGCCAAGG CGGAGAAAGC CATTGGCACC
ATCGTGAAGC AGATAGCAGA GCTCGAGGAA TGGGAGCGTG AAGTCATCTT CCCTCTGGCG
CAGGAGAAAA AGAAAATCGA TCTCGACGAG GGCGTCAAAC GGAACTACCC CCGCTTCGGC
GCGGCGTTGA AACCCATCAA GGGCCTGGAG GAGGCGGATG AGTGA
|
|---|
| Protein sequence | MDTTKLKKFA QFARRALIEQ VAARLEAVRG EGSAAQREHP VAFKKLQASI AEHGADDVIE
RVAYIWFNRF TALRFLDVNE LSAVRVVSPL PGQFQPEILA DAKAGNINEQ LVPEATRRKV
RDLLEGLTPS QDPQAEAYRL LLVAICNSWQ TTMPFMFERI DDYTELLLPA DLLSNASILA
YLREAMTPDA CQDVEIIGWL YQFYISEKKD QVFAALKKNK KIEAENIPAA TQLFTPHWIV
RYLVENSLGR LWLLNRPGSK LAERMDYYIA PKEPETDFLK IGKPEEIKVC DPACGSGHML
TYAFDLLYAI YEEEGYEADK IPALILANNL TGVEIDDRAG ALAAFALAMK AAAKLGRRRF
LRMEAKPDIC VLQDVKFTDA ELRDVAAVVG KDLFTDELRE TLGQFEQAKN FGSLIVPKLR
DPAETLRVVV ARDFDADLLL RPVLERLEKV LCMAEALSPK YHVVVANPPY MGSKGMNKTL
ESWAKKHFKD SRADLYAMFM ERSLALCVRH GFTAMINMQS WMFLSTFDSL RSKLLTQNAI
VSMAHLGERG FDTIGGAVVS TTAFVLGKAY SPRTEGVFLR LVSGRNEAEK STAARAAVSG
VNSDVKFCSS AADFQKLPGN PIAYWASEAF LRLFDEGKPI TDFVSSRDGL TTGDNEAFIR
YYWEPAFESV GFGYADAKDF WKSGRKFAPL IKGGSYRKWF GNLSNVITYD KQHYEVLAVS
GNKLPSREKY FQRNLNWTRI SSPSGSFRYT EPGCIFESAS LCTYSDSDQD MFYALAGANS
CITIPQLDLV NPTTNLLSGY FDMLHLPEHD AAARSIAAGN AKQLVSLAKS DWDAYETSWD
FTTLPLLSPD HRAGTLEATF ARLRAHWQGM TDEMKRLEEE NNRIFINAYG LQDELTPEVP
IKEITLTCNP AYSISGDKTE TEREDALRVC TMQEFLSYAV GCMFGRYSLD APGLILANQG
ETLAEYLARV PEPSLLPDED NVIPVLSEEF ESWFPDDIAD RFRKFLRVTF GDAYFRENLA
FIEAQVGDIR KYFSKAFYDD HVKRYKKRPI YWMFSSPKGT FQALIYMHRY RPDTVSVLRN
EYVVEFIRKL EAERAKLAKQ SDDPSATQAQ RAKAEKAIGT IVKQIAELEE WEREVIFPLA
QEKKKIDLDE GVKRNYPRFG AALKPIKGLE EADE
|
|---|
| |