| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3671 |
|---|
| Symbol | |
|---|
| ID | 5085531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | + |
|---|
| Start bp | 566994 |
|---|
| End bp | 567527 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640485229 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_001169844 |
|---|
| Protein GI | 146279686 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.568526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.645134 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGAAA CCGACGAGAT CCTTGCCGAA CTGACCCCGC TCCGGCGCTA CGCCCGGTCG
CTCACGCGCA ACGAGGCGGA AGCCGAGGAT CTGGTGCAGG AGGCGCTGTT GCGCGCGCAT
GAGCGGCGGG CGAGCTTCCG GCGTGGCAAG GGGCTGCGGG TCTGGCTCAT GTCGATCCTG
CACAACAGCT TCATCGACGG CCTGCGCAGC CGCCGCGCCC GCGAACGGCG CGAGGCCGCG
GTGATGGAGG CGGCACCCGC GTCTCATCCC GCGTCGCAGG AAAGCGCGGT GCGGCTGGCG
CAGATCCGCG TGGCCTTTGC GCAGCTGCCG GAAGAACAAC GCGCCGCCCT GCATCTCGTG
GCGATCGAGG GGCTTTCCTA CAACGAGGCA GCGCTCGTTC TGGGCGTGCC GCAGGGCACG
CTCATGTCGC GCATCGCGCG GGCACGGGCG GCGCTGCGGG AGTTCGAGGA TGGCACGGGA
GCGGCGCGCC AGCCGCTTCG GGTGGTGGGA GGACGCGATG CAGACGATGC CTGA
|
|---|
| Protein sequence | MRETDEILAE LTPLRRYARS LTRNEAEAED LVQEALLRAH ERRASFRRGK GLRVWLMSIL
HNSFIDGLRS RRARERREAA VMEAAPASHP ASQESAVRLA QIRVAFAQLP EEQRAALHLV
AIEGLSYNEA ALVLGVPQGT LMSRIARARA ALREFEDGTG AARQPLRVVG GRDADDA
|
|---|
| |