| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3377 |
|---|
| Symbol | |
|---|
| ID | 5086037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | - |
|---|
| Start bp | 252849 |
|---|
| End bp | 255125 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640484945 |
|---|
| Product | nickel-dependent hydrogenase, large subunit |
|---|
| Protein accession | YP_001169562 |
|---|
| Protein GI | 146279404 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.457459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGGG CGCCCGGTGC ACGGGACGGC GACGCGCCCT CCGCTCCTCC ATCACTGGCC
GGAGCGCCGG GCGAAGGGCT CGAGATCCGT GTCCGCGGGC AGGTGCAAGG CGTCGGGTTT
CGCCCCTTCG TCTGGCAGCT GGCGCGCGGG ATGGGCCTTG CGGGCGAGGT GCTGAACGAT
GGCGAGGGCG TGCTGATCCG GGTCTCGGGG GGCGATCTGA CGGCCTTCGT GGCGGCGCTC
CGCGACATGG CGCCGCCGCT CGCCCGCGTG GACAGGGTCG AGGTGGCGCC CTGCCGGGTC
GAGGCGTCGG GCTTCGGGAT CGCGCCCAGC GGCAAGGGCG CCGTCGCCAC GCGGGTGACG
CCGGACGCCG CCACCTGCGG CGCCTGTCTT GAGGAGATGC GGGGCGACGG ACGGCGGCGC
GGCTACGCCT TCACCAACTG CACCCATTGC GGACCCCGCT TCACCATCCT GCGAGAGCTG
CCCTACGACC GGGCGCAGAC CTCAATGGCG GGCTTTCCCA TGTGCCCCGA CTGCGCGGCG
GAGTATGGCG ATCCAGCCGA CCGGCGCTTT CACGCCCAGC CCATTGCCTG CCCGGCCTGC
GGACCGCGGA TCTGGTTCGA GGCGCATGGC CACGAAGGCG GTGCGCTGGC CGAGGCGGTG
GCGTTGCTGC GGCACGGCGG GGTGCTGGCC GTGAAGGGGC TCGGCGGGTT CCACCTCGCC
TGCGATGCGC GCAATGCCGA GGCCGTGGCG CGGCTGCGCC TGCGCAAGCG GCGGCCGGGC
AAGCCCTTCG CGGTCATGGC GGCCGAGGAG ATGGCGGACA GGATCGCCGA GATCTCCGAG
GCCGACCGGG CGCTGCTGCG CGATCCGGCG GCTCCGGTGG TGCTGGTGCC GTCGCGCGGG
GTGCTGCCCG AAGGGGTGGC GCCGGGCATG GCGGCGCTGG GGCTGATGCT GCCCTACACG
CCGCTGCATC ACCTTCTGCT CCAGGGATTC GGCGGGCCAC TGGTGATGAC ATCGGGGAAC
CTGTCGGGCG AGCCGCAGGT GATCGGCAAT GACGAGGCGC GCGAGAAGCT CGCAGCCTTC
GCCGACGGTT TCCTGATGCA TGACCGCGAG ATCGTCCGCA GGCTCGATGA CAGCGTCGAG
AGGGCGCGGC CGCCGATGGT GCTGCGCCGG GCGCGGGGGC GCGCGCCGGG GACGCTGCCC
CTGCCCGAGG GCTTCGGGCG CGCCCCGCAG GTTCTGGCGC TCGGCGGGCA GATGAAGGCC
GCGATCTGCC TCGTGCGGGA CGGGCAGGCG CTGCTGTCGC ACCACCTCGG CGATCTCGAT
GAGGCGCTGA CCTTCGACGA GTTCCGCCGC GCCCTTCGCG ACCACGCGGC GCTCTTCGAC
CATCGGGCCG AAATCGTGGC GGTGGACCTG CATCCGGGCT ATCGCGCGAC GCAGGCGGGC
CACGCGATGG GCCTGCCGGT GGCCGAGGTG CAGCATCACC ATGCACATCT CGCCTCCTGT
CTGGCCGATG CGCTCTGGCC ACTGGGCGGC GGGCCGGTGG CGGGCATCGT GCTGGACGGG
ACGGGCCTCG GAGCGGATGG CACGATCTGG GGCGGCGAGC TGCTGCTGGG CGACTACGCC
GGGTTCGAGC GTGGGGCGCA TCTGGCGCCT GCGCCCCTGG CCGGGGGCGA GGCCGCCGCG
CGCGAGCCCT GGCGGAATGC GCTGGTGCGG CTCGACGCGG CAGGACTGGC CGATCTGGCC
GACCGGCTCT TTCCCCGTCA GCCGCGCGAG GTGTTGCGAC GGGCGGTGGC GGCGGGGGTG
AACGCGCCGC TGTCCTCGTC GGCGGGCCGG CTCTTCGATG CGGTGGCGGC GTGCCTCGGG
CTGGCGGCGG CGTGGCAAGG CTACGAGGGC GAGGCCGCCA TGCGGCTCGA GGCGCTGACG
GGCGATGGCG CGCCCTACCC GTTCGAGGGC CTGAACCCCG CGCCGATGTT CCGGGCGCTG
GCGCGTGACC TGGAGGCGGG AGCCGCGCCG GGGTCGATCG CGCAGAGCTT TCACCTCGGC
CTCGCGCGGG CCTTCTGCGC CCCCGCCCGG CACCTTGTCG AGACGGGCCG TGCGCAGGCG
GTGGCGCTGA CGGGCGGGTG CTTTCAGAAC GCGCGGCTGC TCCAAGCCTG TCTGGCGGAA
CTCGAGGGGC TTCCGGTGCT GACCCATCGA GCCGTGCCGG CCAACGATGG TGGACTGGCT
CTGGGGCAAG CGCTGGTTGC CGCAGCGCGG CATATCGGCG CGGCGGAAAC AGCCTGA
|
|---|
| Protein sequence | MAGAPGARDG DAPSAPPSLA GAPGEGLEIR VRGQVQGVGF RPFVWQLARG MGLAGEVLND
GEGVLIRVSG GDLTAFVAAL RDMAPPLARV DRVEVAPCRV EASGFGIAPS GKGAVATRVT
PDAATCGACL EEMRGDGRRR GYAFTNCTHC GPRFTILREL PYDRAQTSMA GFPMCPDCAA
EYGDPADRRF HAQPIACPAC GPRIWFEAHG HEGGALAEAV ALLRHGGVLA VKGLGGFHLA
CDARNAEAVA RLRLRKRRPG KPFAVMAAEE MADRIAEISE ADRALLRDPA APVVLVPSRG
VLPEGVAPGM AALGLMLPYT PLHHLLLQGF GGPLVMTSGN LSGEPQVIGN DEAREKLAAF
ADGFLMHDRE IVRRLDDSVE RARPPMVLRR ARGRAPGTLP LPEGFGRAPQ VLALGGQMKA
AICLVRDGQA LLSHHLGDLD EALTFDEFRR ALRDHAALFD HRAEIVAVDL HPGYRATQAG
HAMGLPVAEV QHHHAHLASC LADALWPLGG GPVAGIVLDG TGLGADGTIW GGELLLGDYA
GFERGAHLAP APLAGGEAAA REPWRNALVR LDAAGLADLA DRLFPRQPRE VLRRAVAAGV
NAPLSSSAGR LFDAVAACLG LAAAWQGYEG EAAMRLEALT GDGAPYPFEG LNPAPMFRAL
ARDLEAGAAP GSIAQSFHLG LARAFCAPAR HLVETGRAQA VALTGGCFQN ARLLQACLAE
LEGLPVLTHR AVPANDGGLA LGQALVAAAR HIGAAETA
|
|---|
| |