| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3339 |
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| Symbol | |
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| ID | 5085830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009429 |
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| Strand | + |
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| Start bp | 214798 |
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| End bp | 217362 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640484908 |
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| Product | GntR domain-containing protein |
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| Protein accession | YP_001169525 |
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| Protein GI | 146279367 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.466737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.260715 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACTG TGCAAGACCG GGGAGCAGGC TTCTGGATGG TGATGGCGCT CGCCGCCGTC
ATCGTGATCT TCGGCCTCCT GATCGCCGCG GGCGGCGGGT GGCTTTTGGC ATTGGGCGGG
TCGTGGTATT ACCTGCCCGC CGGGCTGGGG CTGCTGGTGA CGGGGTGGCT GCTGTTCCGG
CAGTCGATGG CTGCGGTGTG GGTCTATCTC GTCGTCTATG CCGGAACCGT CGTCTGGGCC
TTGTGGGAGG CCGGGCTGAA CCTCTGGCCG CAGGTGCCGA GGCTGGTGGC GCCGACGCTG
GTCCTGCTTC TGGTGCTGCT CTCGATCCCG GTCCTGCGCC GTGGATCGCG CGGGGCGTCT
GCGCGCCGCA CCGTGGCGGG CGCGCTGGCG ATCGGCCTCG GCTGCGGGCT CCTGCTCACG
GGCGGCCCGC GCGAGGGGAT TGCACAGGAG GCGGCCCCTC CGGGCGAAAC GCCGGCGCCG
GCCGAGGCGC CACCGGACAC GACGGCCCCC GAAACGCCGG CACCTGCCGG AGGCGACGCC
TCCACGGCGG GGCCCGGTCC CGCGCCGACC GAGGAACCCG ACGCGGTCAA CACGGCGGAG
GAAGCCCCCG CGGCCCTCGG GGCCGATGCG GAACGGGCGG CGGCGCCCGT GCTGCAGACC
GGAGAGGACT GGCCCGCCTA TGGCGGCACG ACCGAGGCCC GGCGCTACTC GCCGCTCGAC
CAGATCGACA CGTCGAACGT GGGCGATCTG GAGCGGGTCT GGAGCTTCCG CACCGGCGAT
CTTCCCTCGG AGGCGGCCCG GGGCCGCTAC TCGCCCGAGA ACACGCCGCT CAAGGTGGGG
GACGATCTCT ATATCTGCAC GCCGATGGGG CGGATCGTGG CGGTCGATGC CGCGACGGGG
CTCGAGGAAT GGCGGTTCGA TCCGGGAGTG TCGGACGATG CCATCCCCTA CGGGGCGACC
TGCCGCGGCG CGGCCTACTA CGAGGTGCCC GGCGCGGCGG CCGACGAGGC CTGCGCCCGG
CGCATCCTGT GGGGGACGCT CGATGCGAGG CTGATCGCGG TCGATGCGCA GCTGGGCCAG
CCCTGCCCGG ACTTCGGCCT GAACGGCGAG GTCAATCTGG AGGAAGGCCT CGGCGATACG
GTGCCGGGAT GGTACTCCGT CACCTCGCCC CCGACGATCG TGCGCGGCGT GGCGGTGATG
GGCGCGCAGG TCAAGGACGG GCAGGCCGAG AACAGCCCTT CGGGCGTGGT GCGCGGCTAT
GATGCGGTGA CGGGTGAGCT GGCATGGGCC TGGGATCTGG GCAATCCCTC CAACCGCGGC
GCCCCGGCCG AGGGCGAGGT CTATACCCGC GGCACGCCCA ACATGTGGAC CATCGCCGCC
GCCGACGAAG AGTTGGGCCT TGTCTATCTG CCGATGGGCA ATTCGGCGGT GGATTACTAC
GGCAGCAACC GCAGCGAGGC CGAGAACGAA TATGCGACCG CGCTGGTGGC GGTGGATGCG
CTCACGGGCG ACGATGTCTG GCACTTCCGC ACGGTCTATA ACGACGTGTG GGACTATGAC
CTCGGGTCGC AGCCGAGCCT CGTGGACTTT CCGACCGCGG ACGGCCCGCG TCCCGCCCTG
ATCCTGTCTT CGAAGCAGGG CGACATGTTC GTGCTGGACC GCGCCACCGG CGAGCCGCTG
GTGCCGTTCG AAGAGCGCGA GGTGCCGACC GATCTGGGTG TCGAACAGGA TTACCTGTCG
CCCGTCCAGC CGTTCTCCGG CTACCACAGC CTGCTGATGC CCGACCTCGA GGAACGGCAC
ATGTGGGGCA TGACCCCGCT CGACCAGCTC TGGTGCCGCA TCCAGTTCCG CCGGGCGCAT
TACCGCGGCG TCTATACGCC GCCGACGGCC GACCGGCGCT GGATCCAGTA TCCCGGCTAC
AACGGCGGGC AGGACTGGGG CTCGATGGCG GTGGATGTCG AGCGGGGGCT CCTGATCGCG
AACTACAACG ACATGCCGAA CTACAACCGC CTGATCCCGC GGGACGAGGC CGACGAGATG
GGCGCGCGGG CGATCTTCGA GCCGGACTAT CAGCCCGAAG GGGGGCCGGA CGACGATCCG
CAGCTGGGCT CGCCCTACGC GATCTCGGTC AACGCGGGGT GGCGCGTGGG CCTGACGGGG
CTGCTCTGCA AGGAGCCGCC CTATGGCGGC ATCCGCGCGA TCGACCTGGC AACCGGAGAG
ACCGTCTGGG ACGAGCCTCT GGGGACCGCC CGCCGCAACG GGCCCTTCGG CATCCCGAGC
ATGCTGCCGA TGAAGATCGG CACACCGAAC AACGGCGGCC CGATCGTGAC CACCGGCGGG
CTGATCTTCA TCGCCGCCGC CACCGACGAT CTCATCCGCG CCATCGATCT CGAGACGGGC
GAGACCCTCT GGCAGGACGC CTTGCCCGGC GGCGGGCAGA CCACGCCCAT CACCTACGAG
GTGGGGGGGC GGCAGTTCGT GGTGATCTAT CCCGGCGGCC ATCACTTCAT GGAAACGCCC
ATCAGCGACG AAGTGATCGC CTACGCGCTG CCCGCGTCCG ACTGA
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| Protein sequence | MATVQDRGAG FWMVMALAAV IVIFGLLIAA GGGWLLALGG SWYYLPAGLG LLVTGWLLFR
QSMAAVWVYL VVYAGTVVWA LWEAGLNLWP QVPRLVAPTL VLLLVLLSIP VLRRGSRGAS
ARRTVAGALA IGLGCGLLLT GGPREGIAQE AAPPGETPAP AEAPPDTTAP ETPAPAGGDA
STAGPGPAPT EEPDAVNTAE EAPAALGADA ERAAAPVLQT GEDWPAYGGT TEARRYSPLD
QIDTSNVGDL ERVWSFRTGD LPSEAARGRY SPENTPLKVG DDLYICTPMG RIVAVDAATG
LEEWRFDPGV SDDAIPYGAT CRGAAYYEVP GAAADEACAR RILWGTLDAR LIAVDAQLGQ
PCPDFGLNGE VNLEEGLGDT VPGWYSVTSP PTIVRGVAVM GAQVKDGQAE NSPSGVVRGY
DAVTGELAWA WDLGNPSNRG APAEGEVYTR GTPNMWTIAA ADEELGLVYL PMGNSAVDYY
GSNRSEAENE YATALVAVDA LTGDDVWHFR TVYNDVWDYD LGSQPSLVDF PTADGPRPAL
ILSSKQGDMF VLDRATGEPL VPFEEREVPT DLGVEQDYLS PVQPFSGYHS LLMPDLEERH
MWGMTPLDQL WCRIQFRRAH YRGVYTPPTA DRRWIQYPGY NGGQDWGSMA VDVERGLLIA
NYNDMPNYNR LIPRDEADEM GARAIFEPDY QPEGGPDDDP QLGSPYAISV NAGWRVGLTG
LLCKEPPYGG IRAIDLATGE TVWDEPLGTA RRNGPFGIPS MLPMKIGTPN NGGPIVTTGG
LIFIAAATDD LIRAIDLETG ETLWQDALPG GGQTTPITYE VGGRQFVVIY PGGHHFMETP
ISDEVIAYAL PASD
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