| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3258 |
|---|
| Symbol | |
|---|
| ID | 5086007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | + |
|---|
| Start bp | 126927 |
|---|
| End bp | 127913 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640484830 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_001169447 |
|---|
| Protein GI | 146279289 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.504084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.478184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA CCAGAGGGAT GCCGGCGCTG CTGGCGGGCT GCCTTGTCCT TGCCGCCGGG
GCGCTGCCGG CCGCGGCGCA GCAATACACG CTGCGGCTCA ACCACGTCCA CAGCCCGTCC
GAGCCCTATC AGCAGGCCTT CACCAACTGG GCCGAGCGGG TCAAGGAGCG CACGGACGGC
AACCTCGTGA TCGAGGTCTT CCACAGCGCC CAGCTCGGCG TCGAGGAGGA TATCATCGAG
CAGATCCGCA TGGGCGCCAA TGTCGGCCAG AACACCGACG CGGCCCGCCT TGGCAACTAT
GTCAAGGAGA TCGCGGTCGT GAACGGCCCC TATTTCGTGG ACACGCTGGA GGACGCCTTC
CGCCTGTCCG ATCTCGAGAT CATGAAGGAA TGGGAAGAGC GCCTTGCGCG CGAGGCGGGA
ATCCGCATCG TCTGCTCGGA CTTCGTGCAG GGCAAGCGGC ATTTCTTCAC CAACCGGCCG
GTGCAGGCGC CCGCGGATCT CTCCGGCCAG CGCATCCGCA CCCCCCCGGC GCCGATCTGG
CAGGAATCCG TCCGCGCCCT GGGCGCGCAG CCGACCGCGA TGAGCTATGG CGACATCTAT
CCCGGCCTGC AGCAGCGCGC GGTGGACGGG GCCGAACTCA CCTTCACCAA CGTCGTTGCG
GGCAATTTCA ACGAGGTGCT GACCCACTTC TCGGAAACCG GGCACATCCT GCTCAAGAAC
TACGAGATCG TGAGCGCGCA ATGGTTCGAC AGCCTGCCCG CCGACTACCA GACCGCGCTG
GTCGAGGAAT GTCGCACGGC CGGGCAGGAG GTCTCGCGCC AGCTTGAGGA GATGGCGGCG
GCGGACCGTC AGAAGCTGGT CGATGCCGGC ATGACCCCGG CCGAGGATGT CGATCTCGAG
GCGTTCCGCG AGGCGGGCCT CGGAGCCTAC GAGGCGCTCG GCCTGACCGA GGCGCGGCAG
GCGGTGCTGG ACGAGCTGGG CCGCTGA
|
|---|
| Protein sequence | MTKTRGMPAL LAGCLVLAAG ALPAAAQQYT LRLNHVHSPS EPYQQAFTNW AERVKERTDG
NLVIEVFHSA QLGVEEDIIE QIRMGANVGQ NTDAARLGNY VKEIAVVNGP YFVDTLEDAF
RLSDLEIMKE WEERLAREAG IRIVCSDFVQ GKRHFFTNRP VQAPADLSGQ RIRTPPAPIW
QESVRALGAQ PTAMSYGDIY PGLQQRAVDG AELTFTNVVA GNFNEVLTHF SETGHILLKN
YEIVSAQWFD SLPADYQTAL VEECRTAGQE VSRQLEEMAA ADRQKLVDAG MTPAEDVDLE
AFREAGLGAY EALGLTEARQ AVLDELGR
|
|---|
| |