| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3035 |
|---|
| Symbol | |
|---|
| ID | 5084374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 3104336 |
|---|
| End bp | 3105751 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640484606 |
|---|
| Product | chitin deacetylase |
|---|
| Protein accession | YP_001169224 |
|---|
| Protein GI | 146279065 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG3195] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03164] OHCU decarboxylase
[TIGR03212] putative urate catabolism protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGAT ACCCCCGAGA CATGCGCGGT CATGGTCCCA ATCCGCCCGA TGCGGCCTGG
CCCGGCGGCG CCCGGATCGC CGTCTCGATC GTGCTGAACT ACGAGGAGGG CGGCGAGAAC
TGCCTCCTGC ACGGCGATGC GCAGTCGGAA GCCTTCCTGT CGGACATCGC CGGCGCGCAG
CCCTGGCCGG GCCAGCGCCA CTGGAACATG GAATCGATCT ACGACTACGG CGCGCGCGCG
GGCTTCTGGC GGCTGCACCG GCTCTTCACC GGCCTGAACA TCCCCGTGAC GGTCTATGGC
GTGGCCACGG CCCTCGCCCG CTCACCCGAG CAGGTGGCGG CGATGAAGGC CGCGGGCTGG
GAGATCGCCT CGCACGGGCT GAAATGGGTC GAGCACCGCG ACATGCCCGA GGAGGAAGAG
CGGCGCCAGA TCGCCGAAGC GATCCGCCTG CACACCGAGG TGGTGGGCGA GCGCCCGCGC
GGCTGGTACA CCGGGCGCTG CTCGATCCGT ACGGTGCGGC TCACCGCTGA AGAGGGCGGC
TTCGACTGGA TCTCGGACAC CTACGACGAT GATCTGCCCT ACTGGATCGA GGCGGGCGAG
CGCGACCAGC TCGTGATCCC CTACACGCTC GAGGCCAACG ACATGCGCTT CGCCACCGCC
CCCGGCTACA TCGAGGGCGA GCAGTTCTTC ACCTACCTGC GCGACAGCTT CGACACGCTC
TACGCCGAGG GCTGCGCGGG TCAGGCGAAG ATGTTCTCGA TCGGCCTCCA TTGCCGACTG
ATCGGGCGGC CGGGAAAGAT CGCGGGGCTG AAGCGGTTCC TCGACTACGC GCGCGGGCAT
GACGGCGTCT GGTTCCCCCG CCGCGGCGAC ATCGCCCGCC ACTGGCGCGC GGTCCACCCT
CACCGCCGCC GCCCGCGCCC CTCGCGGATG GACCGCGAGA ACTTCGTCGG CCGCTTCGGC
GGGATCTACG AACATTCCCC CTGGGTGGCC GAGCGCGCCT TCGAGCTGGA ACTCGGACCC
GCCCATGACA GCGCCGCGGG CCTTGCCAAC GCGCTCGCAC GCGCCTTCCG CACGGCCACC
CCCGCCGAGA GGCTCGACGT GCTCAAGGCC CACCCCGATC TCGCCGGCAA GCTCGCCCAG
GCGCGGCGCC TGACGGCCGC CTCCTCCGCC GAGCAGCAAG GCGCCGGCCT CGACGCGCTG
ACGGATGACG AGCGGGCCCG CTTCACCGCC CTCAATGGAG ACTATGTCGC CCGACACGGC
TTCCCCTTCG TCATCGCGGT GCGCGACCAC GACAAGGAGG GCATCCTCGC CGCCTTCCAG
ACCCGCCTCG CCAACGACAG CGCCACCGAA TTTTCCACCG CCTGCCGGCA GGTGGAACGC
ATCGCCGAAC TCCGGCTCCA GGACATGCTG AAATGA
|
|---|
| Protein sequence | MNRYPRDMRG HGPNPPDAAW PGGARIAVSI VLNYEEGGEN CLLHGDAQSE AFLSDIAGAQ
PWPGQRHWNM ESIYDYGARA GFWRLHRLFT GLNIPVTVYG VATALARSPE QVAAMKAAGW
EIASHGLKWV EHRDMPEEEE RRQIAEAIRL HTEVVGERPR GWYTGRCSIR TVRLTAEEGG
FDWISDTYDD DLPYWIEAGE RDQLVIPYTL EANDMRFATA PGYIEGEQFF TYLRDSFDTL
YAEGCAGQAK MFSIGLHCRL IGRPGKIAGL KRFLDYARGH DGVWFPRRGD IARHWRAVHP
HRRRPRPSRM DRENFVGRFG GIYEHSPWVA ERAFELELGP AHDSAAGLAN ALARAFRTAT
PAERLDVLKA HPDLAGKLAQ ARRLTAASSA EQQGAGLDAL TDDERARFTA LNGDYVARHG
FPFVIAVRDH DKEGILAAFQ TRLANDSATE FSTACRQVER IAELRLQDML K
|
|---|
| |