Gene Rsph17025_2257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17025_2257 
Symbol 
ID5083751 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17025 
KingdomBacteria 
Replicon accessionNC_009428 
Strand
Start bp2293000 
End bp2294106 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content73% 
IMG OID640483821 
Productsecretion protein HlyD family protein 
Protein accessionYP_001168452 
Protein GI146278293 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.202721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.250908 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCC AGACCTCTTC CGACTCTCTC CGCGCAACCC CGGTGGTGAC CGAGCCGAAG 
CCCCGCCGGG GGCGCCGCAT CCTGCTGATG GCGGCCCTGC CGGCCGCGCT CCTTGGTGGC
GCCGGCGCCT GGTGGATCAC CGGCGGCCGC TACGAGACGA CCGACAACGC CTATCTGCAT
CAGGCGGTGG TGGCGATCGC GTCCGAAGTC TCGGGCCGCG TGACGGAGGT GTCGGTTGCC
GACAACCGGC CCGTGCAGAA GGGCGACATC CTGTTCGTGA TCGACCCCGA GCCGCGCCGC
CTCGCGCTGG CCAAGGCCGA GGCCGCCGTC GCCGCGGCCC GGCTGCAGGT CGAGCAGCTG
AAGGTGGCCC ATGCGCAGGC CGTGGCGCAG GAGAATCTGG CCGCCGACGA TGCGGCCTAC
CTTGCCAACG AACTTGTGCG CCAGCAGGCG CTTTCGACGA AGGGCGTGTC CGCGACGACC
GCGCTCGACG ACGCCCGCCA CGAGGCGCAG CGCGCGGCCG AACTGCTCGT TGTCGCGCGG
CAGGCCACGG CGAGCGCGCT GGCGGCCCTG GGTGGCGTGG CCGACGGCCC GGTGGACGAT
CACCCGGCGG TGCGCTCGGC GCTGGCGGCC CGCGACGAGG CCGCCTACCA GCTCTCGCTG
ACCGAGGTGC GCGCGCCCGC CGATGGTGTG ATCTACCGCG CGGCGTCGTT CAAGCCGGGG
CAGATGGTGA CGGCGGGCCA GTCGCTCTTC GCGCTGGTCG AGACGCAGGA TGTCTGGATC
GACGCCAACT TCAAGGAGAC GCAGCTGGCA GGCATCGCGC CCGGCCAGAA GGCCGAGGTG
ACCTTCGACC TGCGCCCCGA CCGGCCCTAC GAGGCGACGG TCGAATCCGT GGGCGCGGGC
ACCGGCTCGG AGTTCTCGCT GCTGCCGGCG CAGAACGCGA CCGGCAACTG GGTCAAGGTG
ACCCAGCGGG TTCCCGTTCG CCTGCGGTTC GAGGAGGGGG CCGAGCTGGC GGGCCTCGCC
TCGGGCCTCT CGGCCGAGGT GTCGGTCGAT ACCGGCCGCG TGCGCCACAT ACCGGGGCTC
TCAAGCTTCG CCGCCACCGC CGACTGA
 
Protein sequence
MNAQTSSDSL RATPVVTEPK PRRGRRILLM AALPAALLGG AGAWWITGGR YETTDNAYLH 
QAVVAIASEV SGRVTEVSVA DNRPVQKGDI LFVIDPEPRR LALAKAEAAV AAARLQVEQL
KVAHAQAVAQ ENLAADDAAY LANELVRQQA LSTKGVSATT ALDDARHEAQ RAAELLVVAR
QATASALAAL GGVADGPVDD HPAVRSALAA RDEAAYQLSL TEVRAPADGV IYRAASFKPG
QMVTAGQSLF ALVETQDVWI DANFKETQLA GIAPGQKAEV TFDLRPDRPY EATVESVGAG
TGSEFSLLPA QNATGNWVKV TQRVPVRLRF EEGAELAGLA SGLSAEVSVD TGRVRHIPGL
SSFAATAD