| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2173 |
|---|
| Symbol | |
|---|
| ID | 5084188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 2203916 |
|---|
| End bp | 2205319 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640483736 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001168368 |
|---|
| Protein GI | 146278209 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0314579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGATA CAATATGGCG GCCGGATCTC GCACAATTTC CCGGTCCGAA GTATCTCGCC
CTCGCACGCG CCCTGCGGGA TGCCATCCGC GCAGGACGGT TGAAGCCCGG CGCGCAGCTT
CCGACGGTGC GCGATCTGGC CTGGACGCTC TCGGTCACGC CGGGCACCGT CTCGCGCGCC
TATCAGCTGG CGACGCAGGA GGGGCTGCTC GCGGCCACGG TCGGACGCGG CACCTTCGTC
GCGGCCGCCG AGCCAAGGCT CGGGCCGACG CAGGAGCTGT TTGTCGAGCG CGATCCGCAG
GAGGCGCCGG GTCTGCTCGA TCTCCGCTCG CCGCAGCTGC CGGACGTGGG GCAGATGCCG
CTGTTCTCCG CGGCCCTGAA GCGGGTGGCG GAGGGGCTGG GCGGTGACTG GCGCGACTAT
CCGACCCAGC GCGAAGAGGC GGCGCTGCGC GCGGCTGTGC GCGACTGGCT GGCCGACCGG
GTGCTGGGGC CGATCGCCCC CGAGGACATC GCCCTCACCC ATGGCGGGCA GAGCGCCATC
GGGCTGGTGA TGCTCTGCTG CCTGCGGGGG GACCGGCCCG TGGTGCTGAC GGAAGAGCTT
GCCTACCCCG GCTTCCGCCA CGCCGCGCGG CTGGCGCGGG CCGAGGTGGT GGGGGTGGAA
CTCGACCAGC ACGGACTGCG GCCGGACGCG CTGGAAGCCT GCTGCCGCAA GCACGGGCCG
CAGGTCCTTT GTGTGACGAC CGAGGCGCAG AACCCCACCG CGGCCCGGAT GCCCGAGGAG
CGACGCGCCG AGATCGTCGC CATTGCCCGC CGGCACGAGC TGCAGATCAT CGAGGACGAT
TGCTACACCG TGGCCGAAAG CACCCTTCCC GCCCTGCGCG CGCTGGCGCC CGAGCGGACC
TGGTATGTGG GCAGCCTTTC CAAGACCGTG TCGGCGGCGC TGCGCTTCGG CTACATCCTG
TGCCCGACGG GGCGCGGTGA GGCGGGACGG CTGACCGCGC AGCACGCCTT CTTCGCGCTT
GGCCGGCCGG TGTCGGACCT CTGCCTCGAC CTGTTCCAGA GCGGGCAGGC CGCCGAGATC
CGCCACCGGG TCCAGAGCGC CTTTGCCGAC CGTCTTCAGG CCGTCGTGAA CGGGCTCGGC
TCGCACGAGC TGTCCTGGCA GCCGGGCCTG CCCTTCGTCT GGCTGCGGCT GCCGGTCGGC
TGGCGCACCT CGAGCTTCAC GCGCACCGCC GAAAGCGAGG GCGTGCTGCT GCGCTCGGCC
GATGAATATG CGCTGGTGCA TGGCCGCTCG CCGAACGGGG TGCGGCTGGC CATAGCGGGG
CAGGTGCCGC GCGCGCGGCT GGAAGCGGCG GTCGATCGGC TCTCGCGCCT GCTGGCGTCT
CCCCCCTCCG AGCTTCCGGT GTGA
|
|---|
| Protein sequence | MTDTIWRPDL AQFPGPKYLA LARALRDAIR AGRLKPGAQL PTVRDLAWTL SVTPGTVSRA
YQLATQEGLL AATVGRGTFV AAAEPRLGPT QELFVERDPQ EAPGLLDLRS PQLPDVGQMP
LFSAALKRVA EGLGGDWRDY PTQREEAALR AAVRDWLADR VLGPIAPEDI ALTHGGQSAI
GLVMLCCLRG DRPVVLTEEL AYPGFRHAAR LARAEVVGVE LDQHGLRPDA LEACCRKHGP
QVLCVTTEAQ NPTAARMPEE RRAEIVAIAR RHELQIIEDD CYTVAESTLP ALRALAPERT
WYVGSLSKTV SAALRFGYIL CPTGRGEAGR LTAQHAFFAL GRPVSDLCLD LFQSGQAAEI
RHRVQSAFAD RLQAVVNGLG SHELSWQPGL PFVWLRLPVG WRTSSFTRTA ESEGVLLRSA
DEYALVHGRS PNGVRLAIAG QVPRARLEAA VDRLSRLLAS PPSELPV
|
|---|
| |