| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1963 |
|---|
| Symbol | |
|---|
| ID | 5082438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 2004080 |
|---|
| End bp | 2005930 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640483525 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001168159 |
|---|
| Protein GI | 146278000 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.220325 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.545041 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACG ATCATTCGCC CATCCCCGCG GTCGAGGGCT TTCGAGGCGC CGCGGCGCTG
GTGCGGGCCA TGGCGCGCTT CGGGCGCAAG CGGCTGGCGA TAGCCCTGAC CTTCCTTGTC
CTCGGCAATG TGACCGAGGG CGTCTCGATC CTTCTTCTCC TGCCGATCCT GACACTGGCG
GGGCAGGGTT CGTCCGACTA CGCGATCGAC CTCGGCGGGC GCCATCTCTT CGGCCAGCCC
CTGCCGGACG TGAGCATCGG GCTCGAGGTG CTGCTGGGGG CGATCGTCCT GCTCGTGGCG
CTGCAGGCGG CCTTCAACCG GGTCAAGGCG GTCTATCTGT CGGATCTCTT GCAGGATTTC
GCCAACTCAA CGCGCGCGGG ACTCTTTTCG GCGGTGGCCT CGGCGCGGTG GGAGACGGTG
GTGCGGATGC GCCGGGCCGA TCTCGAACAT GCGCTGACGG GCGAGATCGA CCGGATCACC
TTCTCGGGCT TTGTGTCGCT GAGCCTGATC CAGATCCTCG TGGGTCTCGT GATCTACTTC
GTGCTCTGCC TCGCCGTGTC GGTGCCGATG ACGCTGTTCG CCTTCGGTTT CGGCCTTGTG
GCGTTGCTGT TGCTGAAACC CTACCGCAAG CTTGCCGAAA GGTATGGCCA CAAGATCCAG
ACCGCGCGGA CGGTGCAGGC GCGGCTCGTG TCCGAATTCA TCACCGGGCT CAAGACCGCC
CGCTCGATGA ACCAGGAGCC GCACCATGTC GCCCAGTTCG AGCGCACGCT CGACGGCACC
AAGGCGGATG CCCACGACTA TGCGCGCCGC AACGCGCTGG GCAACGGGCT GTTCCAGGTG
GCGCTGGCGA TCGGAGCCGC CGCCTTCGTG CTGCTCTCTC TCCGCTTCGT CGGGCTCGAG
ATGTCGCAGA TGCTGGTGCT GCTCGTGATC CTGATGCGGG TCACGCCGCG GTTTCAGGGG
CTGCAGGCGC AGGTGCAGGC GCTGCTGGTG GATCTCCCGG CCTGGTGGCG CGTGGTCGAT
CTGCAGAACC GCCTCGAGGC CAACCGCGAG GGCGGGGCCG GCTTCGTCTC GGCGCCGGTC
GCGCCGCCCC GGCACGAGAT CCTGCTCGAC CGCGTGACCT ACCGCCACAC GGAAGGATCG
GAAGAAGCTG CCCTGAACGA CTGCACCATC CGGCTTCCGG TGGGGCAGGC GACGGCCCTG
ATCGGCGCCT CGGGGGCGGG CAAGAGCACG GTGGCCGACA TCGTGATGGG GCTGATCCGG
CCCGAGGCCG GGCGCCTTCT GGTCGATGGG CACGAACTGA CCGAGTCCGA GCGCCGCGGC
TGGCGCGAGC ATCTGGCCTA TGTGCCGCAG GAGACCTTCC TGCTGCATGA CACGATCCGG
GCGAACCTTG CCATCGTGGC CCCCGACGCC ACCGAGGAGG AGATGCACCA GGCCCTCGCC
GATGCCGCCG CCGACCGTTT CGTGGCCGCC TTGCCCGAGG GGCTCGACAC GCGGGTGGGG
GACCGCGGCA CGCTCCTTTC AGGGGGCGAA CGGCAGAGGA TCGCGCTGGC GCGGGCCTTC
CTGAAGCGGC CGGCCGTGCT GATCCTCGAC GAGGCCACCA GCGCGCTGGA CTGGGAGAGC
CAGAGCCGTG TGGCCCAGGC CCTCGCGCGG CGGGCGGGTG AGATGACGGT TCTGACCATC
GCGCACCGGC CCTCGATGGT GGCCTTCGCC GATCACGTCT ATTCGCTGGA AGCCGGACGC
GTGGTCGAGG AAGGGCCGAT GGCCGACCTC TTGCGGAAGA CAGACGGGCA CCTGTCCCGG
ATGTTCGCGC ACGAGGCCTC GGAGCCTGCG CGCCTCAGAC TCGCCCAGTA G
|
|---|
| Protein sequence | MTDDHSPIPA VEGFRGAAAL VRAMARFGRK RLAIALTFLV LGNVTEGVSI LLLLPILTLA
GQGSSDYAID LGGRHLFGQP LPDVSIGLEV LLGAIVLLVA LQAAFNRVKA VYLSDLLQDF
ANSTRAGLFS AVASARWETV VRMRRADLEH ALTGEIDRIT FSGFVSLSLI QILVGLVIYF
VLCLAVSVPM TLFAFGFGLV ALLLLKPYRK LAERYGHKIQ TARTVQARLV SEFITGLKTA
RSMNQEPHHV AQFERTLDGT KADAHDYARR NALGNGLFQV ALAIGAAAFV LLSLRFVGLE
MSQMLVLLVI LMRVTPRFQG LQAQVQALLV DLPAWWRVVD LQNRLEANRE GGAGFVSAPV
APPRHEILLD RVTYRHTEGS EEAALNDCTI RLPVGQATAL IGASGAGKST VADIVMGLIR
PEAGRLLVDG HELTESERRG WREHLAYVPQ ETFLLHDTIR ANLAIVAPDA TEEEMHQALA
DAAADRFVAA LPEGLDTRVG DRGTLLSGGE RQRIALARAF LKRPAVLILD EATSALDWES
QSRVAQALAR RAGEMTVLTI AHRPSMVAFA DHVYSLEAGR VVEEGPMADL LRKTDGHLSR
MFAHEASEPA RLRLAQ
|
|---|
| |