| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1687 |
|---|
| Symbol | |
|---|
| ID | 5083419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 1731994 |
|---|
| End bp | 1733964 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640483245 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001167885 |
|---|
| Protein GI | 146277726 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.306428 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAT TCATCGCGGT GAACATGGCG CCGATCATGT TCGCCTCACT CGTCATGTTC
CTGCTGCTGG GCTATCCGGT GGCCTTCGCG CTGGCGGCGA ACGGCTTGCT GTTCTTCTTC
ATCGGGGTCG AGCTTGCGCC TCTGTCGGAT GGGACGATCA CCCTCGGCTG GAACCTCCTC
GGCACCATGC CGGACCGGTT CTGGGGTGTG CTGTCGAACG AGACGCTGCT GGCCATTCCC
TTCTTCACCT TCATGGGGAT CGTGCTCGAG CGATCGGGCA TGGCCGAGGA TCTGCTCGAC
ACGATCGGGC AGCTCTTCGG GCCGATCCGC GGGGGGCTCG CCTATGCCGT GATCATCGTG
GGGGCGCTGC TCGCGGCCAC CACGGGGGTC GTTGCGGCCA GCGTGATCGC CATGGGTCTG
ATCTCGCTGC CGATCATGCT GCGCTACGGC TATGACCGGC GCATCGCCTC GGGGGTGATC
GCCGCCTCGG GGACGCTGGC GCAGATCATC CCGCCAAGCC TCGTGCTGAT CGTGCTGGCC
GATCAGCTCG GCCGGTCGGT GGGCGACATG TACAAGGCGG CGCTGATCCC CGGCATGGTG
CTGACCGGCA TCTACATGGG CTATGTCCTG GTCATGTCGA TCCTGCGCCC GCAATCCATG
CCGGCCCTGC CGCTCGAGGC GCGGACGCTC GGCTCGGGCG TGACCTCGCT GATCGTCGCG
CTGGTCGTGG CGGTGGGGGT GGCCTTCGGC GCCCACTACT GGCTGGCCGA GACCTACGGC
GCCAAGAACG CCGACATCCT CGGGGCCGTG GCGGGGATCG TGGTGATCTA CATCGCCGCC
ATCCTCGACC GAGCGGCGGG CGGCAAGCTC ATGTCGCGGC TGGCCCAGCA GGTGATCATC
GTGCTGATTC CGCCGCTTGC GCTGATCTTC CTCGTGCTGG GCACGATCTT CCTCGGGATC
GCGACACCGA CCGAGGGCGG CGCGATGGGC GCGGTGGGCG CGCTGCTGCT GGCGGCCGTC
AAGGGCCGGC TGAACCTCGC CGTCGTGACG CAGGCGCTGG CCTCGACCAC GCGGCTCTCG
TCCTTCGTCA TGTTCATCCT GCTGGGCGCG CGGATGTTCT CGCTGACCTT CTACGGCGTG
AACGGGCATA TCTGGGTCGA GCATCTGCTG ACCTCGCTTC CGGGCGGCGA GACGGGCTTC
CTGATCGCGG TTTCGGTGCT GGTGTTCCTG CTGGCCTTCT TCCTCGACTT CTTCGAGCTG
GCCTTCATCA TCGTGCCGCT GCTGGCGCCG GCGGCCGAGG CGCTGGGGAT CGACCTGATC
TGGTTCGGGA TCATCCTCGG CGTGAACATG CAGACCTCGT TCATGCACCC GCCGTTCGGC
TTTGCGCTCT TCTATCTGCG ATCGGTGGCG CCCCGGCAGA GCTACACCGA TCCGGTGACC
AAGGCCCGCA TGGCGCCGGT GACGACCGGG CAGATCTACT GGGGCGCGGT GCCGTTCGTC
TGCATCCAGA TCGTGATGGT GGCGCTGGTG ATCATGTTCC CGCAGATGGT CATGCACTAC
AAGGGCGCCC CGGTGGACAC GTCGAACGTG ACCATCACCC TGCCGCAGAT GCCGGGTCTC
GGTGGCGGTC TGGGAGGCGG CCTCGGAGCG CCGGGTGGCC TGCCCGCTCC GGGCGCCGGT
GGTCTGGGCA CGCCGCCCGG CCTCGCGCCG GCTCCGGCGC CGGGAGGTCC GGGCGTGCCG
CCGGGCCTTG CGCCTCCGAA CGCTCCGGCG CCGGGAGGGC TGGGGGTGCC GCCGGGCCTT
GCGCCTCCGA CGCCCACCGC TCCGGCTCCT GCTGCGCCGG CACCGGGTGG GCTGGGCGTG
CCGCCCGGTC TGGCTCCGCC CGCGACGGGC GAGGTCACGC CACCGGACGC AGGCCCTGGT
CTGGCTCCGG GAGGGGTGCC TCCGGGCCTG GCTCCTCCGG CGCAGGACTG A
|
|---|
| Protein sequence | MMEFIAVNMA PIMFASLVMF LLLGYPVAFA LAANGLLFFF IGVELAPLSD GTITLGWNLL
GTMPDRFWGV LSNETLLAIP FFTFMGIVLE RSGMAEDLLD TIGQLFGPIR GGLAYAVIIV
GALLAATTGV VAASVIAMGL ISLPIMLRYG YDRRIASGVI AASGTLAQII PPSLVLIVLA
DQLGRSVGDM YKAALIPGMV LTGIYMGYVL VMSILRPQSM PALPLEARTL GSGVTSLIVA
LVVAVGVAFG AHYWLAETYG AKNADILGAV AGIVVIYIAA ILDRAAGGKL MSRLAQQVII
VLIPPLALIF LVLGTIFLGI ATPTEGGAMG AVGALLLAAV KGRLNLAVVT QALASTTRLS
SFVMFILLGA RMFSLTFYGV NGHIWVEHLL TSLPGGETGF LIAVSVLVFL LAFFLDFFEL
AFIIVPLLAP AAEALGIDLI WFGIILGVNM QTSFMHPPFG FALFYLRSVA PRQSYTDPVT
KARMAPVTTG QIYWGAVPFV CIQIVMVALV IMFPQMVMHY KGAPVDTSNV TITLPQMPGL
GGGLGGGLGA PGGLPAPGAG GLGTPPGLAP APAPGGPGVP PGLAPPNAPA PGGLGVPPGL
APPTPTAPAP AAPAPGGLGV PPGLAPPATG EVTPPDAGPG LAPGGVPPGL APPAQD
|
|---|
| |