| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1552 |
|---|
| Symbol | |
|---|
| ID | 5084276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 1591237 |
|---|
| End bp | 1592559 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640483111 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001167751 |
|---|
| Protein GI | 146277592 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGATC CGATCCCGTC CGCCCTGATG TTTCCGGCGC TGTTCCTGTT GATCTTTCTC
GGCCTGCCGG TCGCCTTCAG CCTGATCGTC GTCTCGTTCG GCTTCGGCTA TCTCTTCTTC
GGCCCGACGA TTGCCTCGCA GGCCTTCCGG TTTCTCGACA GCATCACCAC GAACTACACG
CTGGCCGCGA TCCCGATGTT CATCTTCATG GGCGCGATGC TGGAACGGTC GGGCGTGGCC
GAGCGGCTCT ACGAGGTCAT GTCGCTCCTG TTCCGCCGGG TGCGCGGGGG CCTCGCGCTG
GCCACGGTCG CGATGTGCGC GCTCTTTGCC GCGGGGACAG GCATCGTGGG TGCGGTCGAG
GCGCTGGTGG GGCTGATGGC CATCCCGGCC ATGATGCGGG CGGGCTACGA CAAGGGGTTG
ATCGCCGGCA CGATCTGCGC CGGCGGATCG CTCGGCACGA TCATTCCGCC CTCGATCGTG
GTGGTGATCT ACGCCAATTC GGCCAATCTT TCGATCGGCA AGGTGATGGC GGGGATCATC
CTGCCCGGCG CGCTGATGGT CATGCTGTTT CTGGGCTACA TCTACCTGCG CGCGCGGCTG
CGGCCCGAGA GCGCCCCGCC GCGCAGGGTG ACCGGGCAGG AGCCGGGCGG GCTCGCGCTT
CTGCGCATGA CGCTCGCCGC GCTGATCCCG CCGATCCTGC TCGTCGTCTC GACCATCGGC
GCGATCCTTG CCGGCATCGC CTCGCCGACC GAGGCCGCGG GCATCGGCGC GCTCGGCACG
GTGCTTCTGG CGCTGGCCTA TCGCACCTTC ACCTGGCGGC GCTTCTACGA GGCCCTGCGC
CAGACGGTCG GGATCAACTG CATGGTGCTG CTGATCGTGG CCGGGGGGAC GATGTTCACC
AGCATCTTCC GGGTGCTCGG CGGGCAGCAG CTGATCACCG GCATCGTGCA ATCCTCGGAC
ATGTCGCCGG CGCTGGTCAC GGCCTTCCTG CTTCTGCTGA TCTTCATCCT CGGCGCGCTG
CTCGACTGGG TGTCGGTGGT GCTGATCACC ATTCCGATCT TCCTGCCGAT CCTGACCCAG
TTCGGCATCG ATCCGCTGTG GTTCGGGGTC ATGGCCATCG TGGTGATCCA GACCTCCTAT
CTGACCCCGC CGATGGCGCC GGCGATCTTC TACCTGCGCT CCATCGCGCC GCCCGAGATG
GGCTATGCGC ACATGTATCG CGGCGTGCTG CCCTTCATCC TTTGCCAGCT CGTGGTGCTG
GCCATCGTCG CCGCCCTGCC GGGCACGGCG ACCTGGCTGC CGGACCGGAT CGTGGGCTTC
TGA
|
|---|
| Protein sequence | MGDPIPSALM FPALFLLIFL GLPVAFSLIV VSFGFGYLFF GPTIASQAFR FLDSITTNYT
LAAIPMFIFM GAMLERSGVA ERLYEVMSLL FRRVRGGLAL ATVAMCALFA AGTGIVGAVE
ALVGLMAIPA MMRAGYDKGL IAGTICAGGS LGTIIPPSIV VVIYANSANL SIGKVMAGII
LPGALMVMLF LGYIYLRARL RPESAPPRRV TGQEPGGLAL LRMTLAALIP PILLVVSTIG
AILAGIASPT EAAGIGALGT VLLALAYRTF TWRRFYEALR QTVGINCMVL LIVAGGTMFT
SIFRVLGGQQ LITGIVQSSD MSPALVTAFL LLLIFILGAL LDWVSVVLIT IPIFLPILTQ
FGIDPLWFGV MAIVVIQTSY LTPPMAPAIF YLRSIAPPEM GYAHMYRGVL PFILCQLVVL
AIVAALPGTA TWLPDRIVGF
|
|---|
| |