Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_1506 |
Symbol | |
ID | 5084755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | - |
Start bp | 1543569 |
End bp | 1545383 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640483063 |
Product | extracellular solute-binding protein |
Protein accession | YP_001167705 |
Protein GI | 146277546 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0138783 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACAGG ATTATCGGCC CGCCCTCAGG GGTCTCATGG CAGCCGCGGG CCTTGCAGTC TGGGGATTCG CAGCCGCCTC GGAACCGCGC CACGGCATAG CTATGTATGG CGAACCTGCG CTTCCACCGG ATTTTGTGTC TCTGCCATAT GCCAATCCCG ACGCCCCCAG GGGCGGGCGG ATCGTGCTGG GCGAGACGGG CGGATTCGAT TCCCTCAACC CCTACATCGT GAAGGGCCGC GCGCCCTACT CGCTCGCCCC GCTCACCGTC GAGAGCCTCA TGGGGCGCTC GATCGACGAG CCCTTCACCC TTTACGGCCT TCTTGCCGAA TCGGTAGAGA CCGACCCGGA GCGGACGTGG GTCGAATTCA CCCTGCGCGA GGGCGCGCAA TTCTCGGACG GATCGCCCGT GACGGTCGAG GATGTCCTGT GGTCGTTCGA GGAACTGGGC ACCCGCGGCA TGCCGCGCTA CTGGATCGCC TGGCAGAAGA TCGCCTCGGC CGAGCAGACC GGCCCGCGCT CCGTCCGCTT CACCTTCACC GAACAGGACC GCGAACTGCC GCTGGTGCTG GGCCTGCGTC CCGTCCTGAA GAAGGCCCAG TGGGCGGGGC GCGACTTCGC GGCCTCGGGG TTCGAGGCGC CGATCGGCTC GGGGCCCTAC ATCCTCGAGA GCTTCGAGCC GGGCCGCTCG CTGCGCTACC GGCGCAACCC CGACTGGTGG GGGCAGGACC TGCCCTTCAA CCGCGGCCTT CACAATTTCG ACGAGGTGAC GGTCGAATAT TTCGGCGACA GCAGCGTCGC GTTCGAGGCC TTCAAGGCCG GCGCCCTCTC GGTCTTCCGC GAGACCAGCG CCGCCAGATG GGCCACGCAT TACGACTTTC CCGCCGTGCG AAGCGGCGCG ATCGTCCGCT CCGAGATCCC GCACGGGCGC CCGTCGGGCA TGGAGGGGCT GGTGATGAAC ACGCGCCGGC CGATCTTCGC CGACTGGCGC GTGCGCGAGG CGCTGATCCA GGCCTTCAAC TTCGAACTGA TCAACCGCAC CCTCACCGGC GGGGCCGAGC CGCGCATCGC CTCCTACTTC TCGAACTCCG ACCTCGGGAT GGCGGTCGGC GCGCCGGCCG AGGGGCGCGA ACGCGCGCTG CTCGAACCCT ACGCGGCCGA TCTGCTGCCC GGCACGCTCG AGGGCTACGC GCTGCCCGTC TCGGATGGCA GCGAGGCCAA CCGGCAGGGC CTGAGGGTCG CGACACGGCT TCTGGCCGAG GCCGGATGGC GGGTCGAGGA CGGGGTGCTG ACAGGCGCCG ACGGGCGGCC CTTCCAGTTC GAGATCCTGC TGCCGCAGGG GGCGGACGCG ATGATCGCGG CGGCCAACAT CTACCGGCAG GCGCTGGCGC GGCTCGGGAT CTCGGTCAGC ATCGCGGCGG TGGATCCGGC GCAATACAAG CAGCGGGTGG ACAACCAGCA GTTCGACATG ACGAGCTTCC TGCGCTCGCT CTCGCTCTCG CCCGGCAACG AGCAGATGCT CTACTGGTCG GCGGAGGGCA AGGACGCCCC CGGCTCGCGC AACCTGATGG GGATGGAGAG CCCGGCGGCC GAAGCGATGA TCCGCGGGAT GCTGGCCACC GATGACCCGG CCGAGTTTCA AGCCTCCGTG AGGGCGCTCG ACCGGATCCT GACGGCCGGT AGATATGTCA TTCCGATGTG GTATCCTCGG GTTTCGCGGC TGGCGCATGA CAGGCACCTG CGCTATCCGG CGACCACACC CATCTATGGC GACTGGCCGG GGTTCCTGCC GGACGTCTGG TGGCAAGAAA ACTGA
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Protein sequence | MIQDYRPALR GLMAAAGLAV WGFAAASEPR HGIAMYGEPA LPPDFVSLPY ANPDAPRGGR IVLGETGGFD SLNPYIVKGR APYSLAPLTV ESLMGRSIDE PFTLYGLLAE SVETDPERTW VEFTLREGAQ FSDGSPVTVE DVLWSFEELG TRGMPRYWIA WQKIASAEQT GPRSVRFTFT EQDRELPLVL GLRPVLKKAQ WAGRDFAASG FEAPIGSGPY ILESFEPGRS LRYRRNPDWW GQDLPFNRGL HNFDEVTVEY FGDSSVAFEA FKAGALSVFR ETSAARWATH YDFPAVRSGA IVRSEIPHGR PSGMEGLVMN TRRPIFADWR VREALIQAFN FELINRTLTG GAEPRIASYF SNSDLGMAVG APAEGRERAL LEPYAADLLP GTLEGYALPV SDGSEANRQG LRVATRLLAE AGWRVEDGVL TGADGRPFQF EILLPQGADA MIAAANIYRQ ALARLGISVS IAAVDPAQYK QRVDNQQFDM TSFLRSLSLS PGNEQMLYWS AEGKDAPGSR NLMGMESPAA EAMIRGMLAT DDPAEFQASV RALDRILTAG RYVIPMWYPR VSRLAHDRHL RYPATTPIYG DWPGFLPDVW WQEN
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