| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1500 |
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| Symbol | |
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| ID | 5084749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009428 |
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| Strand | + |
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| Start bp | 1532748 |
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| End bp | 1536239 |
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| Gene Length | 3492 bp |
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| Protein Length | 1163 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640483057 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001167699 |
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| Protein GI | 146277540 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0625318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAATG GAACGCGGAT CCTCCTCGGC GGTGCGCCCG AGGGCTACGA CGCCCGCCTG
GTCGCGAAAG AGCTCGACCG CGGTGCCCCT GTCATCCATG TCGCGCGCGA CGACAAACGG
CTCGAGGCGA TGCGCGCGGC GCTGGCCGTC ATGGCGCCGC AGGCCGTCGT GCTGGAACTG
CCCGCCTGGG ACTGTCTGCC CTATGACCGG GTCTCGCCCA ACCCCGAGAT CTCCTCGCGC
CGGATGGCGA CGCTGGCCGC GCTCGCGCAC GGGATGCCGG GGCCGTTCGT GCTGCTGACG
ACGCTGAACG CGGCCACGCA GCGCATCCCG GCGCGGGATC TGCTGCGTGC GGCCTCCTTC
ACGGCCCGCG TGGGTGACCG GGTGGATGAA GGACGGCTTC GAACCTACCT GTCCCGTATG
GGTTTTTCGC TGACCGATAC GGTGACGGAA CCCGGTGACT ACGCGATCCG CGGCGGCATC
GTGGACATCT TCCCGCCGGG TGTGGCGGGG CCGGTGCGGC TCGACTTCTT CGGCGACGTG
CTGGACGGCG CGCGCCGCTT CGACCCCGAG ACCCAGCGGA CGGTCGAGAA GCTCGACCTT
GTCGAGCTGG CTCCGGTGTC CGAGGTGATG CTGGACGAGG GGTCGATCAC CCGCTTCCGC
CAGAACTACC GGATCGAGTT CGGAGCCGCG GGCACCGACG ATCCGCTCTA CGAGGCGGTC
AGCGCGGGGC GCAAGCATCA GGGGATGGAG CACTGGCTGC CCTTCTTCCA CGAGCGGCTG
GAAACGCTGT TCGACTACCT GCCCGAGGCG AGCGTGATGC TCGACGATCA AGTGACGCCC
GCGCGGATTT CGCGCTGGGA GGGGATCGCC GACCAGTATG ATGCCCGGCG CGAGGCGATG
ACGGCGAAGG GTCGTCTCGA CACGGTCTAC AAGCCCTCGG CGCCCGAGCT TCTCTATCTG
GACGAAGCCG CCTGGGACGC GGCGGTGGTG GGGCACCGGG TCATCCAGCT GTCGCCGCTG
GCCCAGAGTC CGGGTCCGGG TGTGCTGGAT GCCGGCGGTC GCATGGGCCG CAATTTCGCG
CCGGAGCGGC AGGCGGAAAA TGTCAGCCTG TTCGGTGCCT TGGTCGATCA TGTTCGCACG
TTGCGCGAAC AGGGTCAGGT GGTGATCGCC AGCTGGTCCG AAGGCGCGCG CGAGCGACTG
AAGGGGCTTC TGGAGGATGC GGGGCTGCAG GGCGCGAAGT TCGTCCGCGA CATCCGCGAC
GTCCCCGAGG GGCGCGGCGG CACGCATCTG ATGGTCTGGT CGCTGGAGCA GGGCTTTACC
GCGCCGGGCC TTGCGGTGAT CTCGGAACAG GACGTGCTGG GCGACCGGCT GATCTCGAAG
CCGAAGAAGC GCCGCAAGGC CGAGAACTTC CTGCGCGAGC ACGACACTCT GACGCCCGGC
GATCTCGTCG TCCATGTCGA GCATGGCGTG GGCCGCTACA TGGGGCTCGA GACGCTGCGC
GTTCCGCAGC CGCCCTCGAA CAAGCCGGGG CCGCCGCACG ATTACCTGCA TCTCGTCTAT
GCCGAGGACG CGAAGCTCTA CCTGCCGGTG GAGAACATTG AGCTTCTCAG CCGTTACGGG
CATGAGGAGG GCCTGATCGA CAAGCTGGGC GGCGGGGCGT GGCAGGCGAA GAAGGCCCGC
CTGAAGGAGC GCATCCGCGA GATCGCCGAG CGGCTGATGC GGATCGCGGC CGAGCGTCAC
CTGCGCCATG CGCCGATCCT CGAGGCGCCG CATTCGCTGT GGGAGGCCTT CTCGGCCCGC
TTTCCCTATC AGGAGACCGA CGATCAGCTG TCGGCCATCG CGGATGTCAT CAAGGACCTG
GAATCCGGCA GCCCGATGGA CCGGCTGGTG GTGGGCGACG TGGGCTTCGG CAAGACCGAA
GTCGCGATGC GCGCGGCCTT CGTGGCGGCT CTGGCCGGGA TGCAGGTCGC GGTGATCTGC
CCGACGACGC TGCTCGCGCG GCAGCATTTC CGCAGCTTTT CCGAGCGCTT CCGCGGTTTT
CCGATGAAGG TGCGTCAACT TTCGCGCTTC GTGTCCGCGA GGGAAGCGGC CGAGACGCGG
GCGGGGCTGG CCGACGGGAC GGTGGATATC TGCATCGGCA CCCACGCGCT TCTGGCCAAG
GGCGTGAAGC TGAAGAGCCT CGGCCTTCTC ATCATCGACG AGGAGCAGCA TTTCGGCGTC
TCGCACAAGG AGCGGCTGAA GGAGATGCGC TCGGAGGTGC ATGTGCTGAC CCTGACCGCG
ACGCCGATCC CGCGGACGCT GCAACTGTCG CTGACCGGGG TGCGGGATCT GTCGATCATT
GCGACGCCCC CGGTGGACCG GCTGGCCATC CGCACCTATG TGTCCGAGTT CGACACGGTG
ACGATCCGCG AGGCGCTTCT GCGCGAACGC TACCGGGGCG GGCAGAGCTT CTTCGTCGTG
CCGCGCCTGT CGGACCTGCC CGACATGGAG GCCTTCCTGC GCGAGCATGT GCCCGAGGTG
ACCTATGTCG TGGCCCACGG CCAACTGGCG GCGGGCGACC TCGACGAACG GATGAACGCC
TTTTATGACG GCAAGTTCGA CGTGCTTCTT GCCACGACGA TCGTTGAGTC CGGTCTCGAC
ATTCCCACCG CCAACACGAT GATCGTGCAT CGCGCCGACA TGTTCGGCCT CAGCCAGCTT
TACCAGATCC GCGGCCGGGT GGGCCGGGCC AAGACGCGGG CCTACTGCTA CCTGACCACC
AAGCCTCGCG CGCCCTTGAC GCCGCAGGCG ATCAAGCGGC TGCGGCTGCT GGCCAGTCTC
GACAGCCTCG GCGCGGGCTT CAACCTGGCC AGCCACGACC TCGACCTGCG GGGCGCGGGC
AACCTGCTGG GCGAGGAACA GTCGGGCCAT ATCAAGGAAG TGGGCTACGA GCTTTACCAG
CAGATGCTGG AGGAGACGAT CCAGAAGCTG CGCTCGGGCG AGTTGCAGGG CCTGACCGAG
CAGGACGAGC AATGGGCGCC GCAGATCAAC CTCGGGGTGC CGGTGCTGAT CCCCGAGGAA
TTCGTGCCGG ATCTCGACGT GCGGCTGGGG CTTTACCGCC GGCTCTCGGG GCTGACGACC
AAGGTCGAGC TGGAGGGCTT CGCCGCCGAA CTGATCGACC GCTTTGGCCC ATTGCCCAAG
GAGGTCAACA CCTTGCTCCT CGTTGTTCGT ATCAAGGCCA TGTGCAAGCG CGCCGGGATC
TCTCGGCTGG AGACCGGGCC TCGGGGGGCC ACGGTCCAGT TCCACAACGA CAAGTTCGCC
AATCCGGTGG GGCTTGTGGA TTTCATCAAG GCGCAGGGGG ACACGGCGCG GGTGAAGGAC
AACAAGATCG TGCTTGCGCG CGATTGGAAG ACGGAAGGTG ACCGGATCAA GGGCGCCTTT
GCCATCGCAC GCGATCTGGC CGAAAAGCTG GTGAAGCCCG AAAAGGCCAA GGCCAAGGCA
CCCTCCGCCT GA
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| Protein sequence | MQNGTRILLG GAPEGYDARL VAKELDRGAP VIHVARDDKR LEAMRAALAV MAPQAVVLEL
PAWDCLPYDR VSPNPEISSR RMATLAALAH GMPGPFVLLT TLNAATQRIP ARDLLRAASF
TARVGDRVDE GRLRTYLSRM GFSLTDTVTE PGDYAIRGGI VDIFPPGVAG PVRLDFFGDV
LDGARRFDPE TQRTVEKLDL VELAPVSEVM LDEGSITRFR QNYRIEFGAA GTDDPLYEAV
SAGRKHQGME HWLPFFHERL ETLFDYLPEA SVMLDDQVTP ARISRWEGIA DQYDARREAM
TAKGRLDTVY KPSAPELLYL DEAAWDAAVV GHRVIQLSPL AQSPGPGVLD AGGRMGRNFA
PERQAENVSL FGALVDHVRT LREQGQVVIA SWSEGARERL KGLLEDAGLQ GAKFVRDIRD
VPEGRGGTHL MVWSLEQGFT APGLAVISEQ DVLGDRLISK PKKRRKAENF LREHDTLTPG
DLVVHVEHGV GRYMGLETLR VPQPPSNKPG PPHDYLHLVY AEDAKLYLPV ENIELLSRYG
HEEGLIDKLG GGAWQAKKAR LKERIREIAE RLMRIAAERH LRHAPILEAP HSLWEAFSAR
FPYQETDDQL SAIADVIKDL ESGSPMDRLV VGDVGFGKTE VAMRAAFVAA LAGMQVAVIC
PTTLLARQHF RSFSERFRGF PMKVRQLSRF VSAREAAETR AGLADGTVDI CIGTHALLAK
GVKLKSLGLL IIDEEQHFGV SHKERLKEMR SEVHVLTLTA TPIPRTLQLS LTGVRDLSII
ATPPVDRLAI RTYVSEFDTV TIREALLRER YRGGQSFFVV PRLSDLPDME AFLREHVPEV
TYVVAHGQLA AGDLDERMNA FYDGKFDVLL ATTIVESGLD IPTANTMIVH RADMFGLSQL
YQIRGRVGRA KTRAYCYLTT KPRAPLTPQA IKRLRLLASL DSLGAGFNLA SHDLDLRGAG
NLLGEEQSGH IKEVGYELYQ QMLEETIQKL RSGELQGLTE QDEQWAPQIN LGVPVLIPEE
FVPDLDVRLG LYRRLSGLTT KVELEGFAAE LIDRFGPLPK EVNTLLLVVR IKAMCKRAGI
SRLETGPRGA TVQFHNDKFA NPVGLVDFIK AQGDTARVKD NKIVLARDWK TEGDRIKGAF
AIARDLAEKL VKPEKAKAKA PSA
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