| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1262 |
|---|
| Symbol | |
|---|
| ID | 5084775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 1301864 |
|---|
| End bp | 1302523 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640482820 |
|---|
| Product | Hly-III family protein |
|---|
| Protein accession | YP_001167468 |
|---|
| Protein GI | 146277309 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.254618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACGC GCTTTGCCCC CCGCTCCGAA TACAGCCGCG CCGAGAGACT CTCGGATGCC
GCCGTCCATG TCTCAGGCAT CGCGGCGGCG CTGTGTGGCG TGCCCGTCCT CATCGCGCTG
ACGGTCCTGT GGCGCGGCGA CGGCATGGCC GTGGCGGGTG CCGCGATCTA CGGCGTGACG
CTCCTGCTGA TGATCTTCTG CTCCGCCATC TACCACATGG TCCCGCACCC GGACTGGACC
GCCCTCCTGC GTCGGCTCGA CCATTCGGCG ATCTATTGCA AGATTGCCGG CACCTATTCG
GCCTTTACCC TGATCTCGGG CACGGGCCTG TCGCTCCTCG CCGGGATCTG GGTCGCCGCC
CTCTGCGGCA CGGCGCTGAA GCTCCACTCG CCCGAGAAGT ACCGCTGGGC GGCGCTGGCG
CTCTATCTCG GCATGGGCTG GGTGGGCGTG CTGCTGGGCT GGCCGATCTT TGCCGCGCTG
ACCATGCCGG TTCTGGTCCT CATGGCGGTG GGCGGGATTC TCTATACCGT GGGGGTCTTC
TTCTTCCTGT TCGAACGCTT GCCCTTCCAC AACACGATCT GGCATCTCTT CGTCCTGACC
GCGAGCATCC TCTTCTACGC CGCGGTCTTC ACCCATGTCG CCGGAACGGC GGCCGCCTGA
|
|---|
| Protein sequence | MITRFAPRSE YSRAERLSDA AVHVSGIAAA LCGVPVLIAL TVLWRGDGMA VAGAAIYGVT
LLLMIFCSAI YHMVPHPDWT ALLRRLDHSA IYCKIAGTYS AFTLISGTGL SLLAGIWVAA
LCGTALKLHS PEKYRWAALA LYLGMGWVGV LLGWPIFAAL TMPVLVLMAV GGILYTVGVF
FFLFERLPFH NTIWHLFVLT ASILFYAAVF THVAGTAAA
|
|---|
| |