| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_1159 |
|---|
| Symbol | |
|---|
| ID | 5084332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 1199683 |
|---|
| End bp | 1201797 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640482717 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_001167365 |
|---|
| Protein GI | 146277206 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.227634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.637978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGACG AGAGGCCGGT GGATCAGCTG ACCGAGGCGG AAGCCGCGGC AGAGCTTGCG
CATCTGGCCG AGGCCATTGC GGCGGCCGAT ACCGCCTACC ACACCCACGA CGCGCCGCGC
ATCAGCGACG CCGACTATGA CGCGCTGAAG CGGCGGAACC GCGCCATCGA AGAGCGGTTT
CCCGCGCTCC GCCGCTCCGA CAGCCCGAGC GAACGGGTGG GGGGCGCGCT GGCCGAGGGC
TTTGCGAAGG TCCGCCACGA GGTGCGGATG CTCTCGCTGG AGAACGCCTT CGAACTTGCG
GAGGTCGAGG AGTGGATCGA GCGGATCCGC CGCTTCCTCG GCCATGTGGG CGACCTGCGC
TTCACGGCCG AGCCCAAGAT CGACGGGCTC TCGCTCTCGC TGCGTTACGA AAAGGGCCGG
CTGGTGCAGG CCGCCACCCG CGGCGACGGC GAAACGGGCG AGAATGTCAC CGAGAACGCG
CGCACCATCG GCGACCTGCC GACGGAATTG ACCGGCGCGC CGGACCTGCT CGAGGTTCGC
GGCGAGGTCT ATATGCGCCA CGCGGATTTT GCGGCGCTGA ACGAACGGCA GGAGGCCACG
GGCCAGCGCC TCTTCGCCAA TCCGCGCAAC GCGGCCGCCG GGTCGCTCCG CCAGCTTGAT
CCCGCCGTCA CCGCTTCGAG GCCGCTTCAT TTCTTCGCCT ACGCCTGGGG CGCCCATTCC
GAGCCTCTGG CCGACACCCA GCAGGGCGCC ATCGCGCGGC TCTCCGCGCT CGGCTTTGCG
ACGAACCCGC TTACGCGGCT CTGCACCGGC CCCGATGAAC TGCTCGCCCA CTACGCCGAC
ATCGAACGCC AGAGGGCGAG CCTCGGCTAT GACATCGACG GCGTGGTCTA CAAGGTGGAC
GACCTCGCCC TTCAGCGCAG GCTGGGCTTC CGCGCCTCGA CCCCCCGCTG GGCCATCGCG
CACAAGTTCG CGGCCGAGCT GGCCTGGACC CAGCTCGAGG GGATCGACAT CCAGGTGGGC
CGCACCGGCG CGCTCTCGCC CGTCGCGCGG CTGAAGCCCG TGACGGTGGG CGGCGTGGTG
GTGGCCAATG CCACGCTCCA CAACGAGGAT TACATCGCAG GCCGCGACTC GAAGGGGCAG
GAGATCCGCG GCGGCAAGGA CATCCGCGTG GGCGACTGGG TGCAGGTCTA TCGTGCGGGC
GACGTGATCC CCAAGGTGGC CGAGGTGGAT CTGTCCCGAC GTCCCGAGGG CGCCGAGCCC
TACCGCTTTC CCGACACCTG CCCCGACTGC GGCTCGGCCG CGATCCGCGA ACCGGGAGAT
TCGGTGCGCC GCTGCACGGG CGGGCTGATC TGCCCCGCCC AGCAGGTCGA GCGGCTGAAG
CACTTCGTCT CGCGCGCGGC CTTCGACATC GAGGGTCTGG GCGCCAGGCA GGTCGAGGCG
CTCTGGCGCG ACGGCTGGAT CCGGCAGCCC GCCGACATCT TCGAGCTGCC GAACCGCTAC
CGCGACGGTC TCCAGCGGCT CGAGAACCGC GAGGGCTGGG GTCGGAAATC GGCGGAGAAC
CTCCTTGCCG CCATCGAGGC GCGGCGGCGG ATCGCGCTGC ACCGGCTGAT CTTCGCCCTG
GGCATCCGCC ATGTCGGCGA GACGACCGCC ACGCTTCTGG CCACGCACTA CGGCAGCTGG
GCGGCCTTCG AGGCCGCGAT GACCCGCGCC GAGGTGGGGA CGGGGTCCGA GTGGCAGGAT
CTTCTGTCGA TCGACGGGGT GGGGGCGGTG CTTGCGACCT CGCTCGTGAC CACCTTCCAC
CAGGAGGCGG AGCGGGCGGC CATCGACGCG CTGGCCGCTC ACCTCACGGT CGAGGATGCC
GAGATGCGGG CGCCGGTCGA AAGCCCGATC GCGGGCAAGA TCGTGGTCTT CACCGGCACG
CTCGAGAAGA TGTCGCGCAA CGAGGCCAAG GCGCGGGCCG AGGCGCTCGG GGCCAAGGTC
TCGGGCTCGG TTTCGGCCCG GACCGACCTC GTGGTGGCGG GACCGGGGGC GGGGTCCAAG
GCAAAACAGG CCGCGGCGCT GGGGGTCGAG ACCATCGGCG AGGACGCCTG GCTGCGCCTG
ATCGGCGACG CATGA
|
|---|
| Protein sequence | MQDERPVDQL TEAEAAAELA HLAEAIAAAD TAYHTHDAPR ISDADYDALK RRNRAIEERF
PALRRSDSPS ERVGGALAEG FAKVRHEVRM LSLENAFELA EVEEWIERIR RFLGHVGDLR
FTAEPKIDGL SLSLRYEKGR LVQAATRGDG ETGENVTENA RTIGDLPTEL TGAPDLLEVR
GEVYMRHADF AALNERQEAT GQRLFANPRN AAAGSLRQLD PAVTASRPLH FFAYAWGAHS
EPLADTQQGA IARLSALGFA TNPLTRLCTG PDELLAHYAD IERQRASLGY DIDGVVYKVD
DLALQRRLGF RASTPRWAIA HKFAAELAWT QLEGIDIQVG RTGALSPVAR LKPVTVGGVV
VANATLHNED YIAGRDSKGQ EIRGGKDIRV GDWVQVYRAG DVIPKVAEVD LSRRPEGAEP
YRFPDTCPDC GSAAIREPGD SVRRCTGGLI CPAQQVERLK HFVSRAAFDI EGLGARQVEA
LWRDGWIRQP ADIFELPNRY RDGLQRLENR EGWGRKSAEN LLAAIEARRR IALHRLIFAL
GIRHVGETTA TLLATHYGSW AAFEAAMTRA EVGTGSEWQD LLSIDGVGAV LATSLVTTFH
QEAERAAIDA LAAHLTVEDA EMRAPVESPI AGKIVVFTGT LEKMSRNEAK ARAEALGAKV
SGSVSARTDL VVAGPGAGSK AKQAAALGVE TIGEDAWLRL IGDA
|
|---|
| |