| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0841 |
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| Symbol | |
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| ID | 5084947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17025 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009428 |
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| Strand | + |
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| Start bp | 860981 |
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| End bp | 862984 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640482399 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001167050 |
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| Protein GI | 146276891 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.104141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGTCA AAGACACTGA CGACGGCAAA CCCGAGGATC AGGACGCCGA AACCTCGCTG
GACATGAGCC AGGCCGCCGT CAAACGGATG ATCGCGGAGG CGCGTGAGCG GGGCTACATC
ACCTACGACC AGCTCAACAC CGTCCTGCCG CAGGATCAGG TCTCGTCCGA GCAGATCGAG
GACGTGATGG CGATGCTCTC GGAGATGGGC ATCAACGTCA TCGAGAACGA GGAAGCCGAG
GAGGGCGAGC CGGCGGGCGA GCTGGTCGAG CAGGGCTCGG GCTCGCGCGA GATCGCCGTG
GCCGGAACGC AGGGCGAGAC GCTCGACCGG ACGGACGATC CGGTGCGGAT GTATCTGCGT
GAGATGGGCT CGGTCGAACT GCTCTCGCGC GAGGGCGAGA TCGCCATCGC CAAGCGCATC
GAGGCCGGCC GCAACACGAT GATCGCGGGC CTGTGCGAGA GCCCGCTGAC CTTCCAGGCG
ATCACGATCT GGCGCGACGA GCTTCTGTCC GAGGACATCC TGCTGCGCGA CGTGATCGAC
CTCGAGGCGA CCTTCGGGCG CTCGCTCGAC GGAGATGACG ACCTGGACGG GCCCGAGATC
GAGGAAGTCG AGGTGACTGC CGCGGCCCCG TCCCCCGCGC CGCGCCGCAC GAACGCCTCC
GAGCCCGAAC TCGATGCCGA CGGCAACCCG ATCAGCCGCG CCGAGGAGGA GGACGAGGAC
GACGAGGCTT CGGCCATGTC GCTCGCCGCC ATGGAAGCGG CGCTGAAGCC GCGCGTGCTG
GAAACGCTCG AACTGATCGC GCGCGACTAT GCGACGCTGG CCGAGATGCA GACCAAGCGG
ATGTCGGCCA CGCTGAACGA CAATATCCGC TTCAACCCCG AGGATGAGGC CGCCTACCAG
AAGCTGCGGT CCGAAATCGT GCTGCTGGTG AACGAGCTTC ACCTGCACAA CAACCGGATC
GAGGCGCTGA TCGACCAGCT CTACGGGATC AACCGCAAGA TCATGTCGAT CAACTCGGCC
ATGGTGAAAC TGGCCGACGC CGCCCGCATC AACCGCCGCG AATTCATCGA GGAATATCAG
GGCTACGAGC TGGATCCGAC CTGGGCCGAA CGGATGGCGC AGAAGTCGGG GCGCGGCTGG
CAGACCCTGA TGGAGAAGAG CCGCGACAAG GTCGAGGATC TGCGGGGCGA CATGGCGCAG
GTCGGCCAGT ATGTCGGCGT GGACATCAGC GAGTTCCGCC GCATCGTGAA CCAGGTCCAG
AAGGGCGAGA AGGAAGCCCG GCAGGCCAAG AAGGAGATGG TCGAGGCGAA CCTGCGCCTC
GTGATCTCGA TCGCCAAGAA ATACACCAAC CGCGGGCTGC AATTCCTGGA CCTCATTCAG
GAAGGCAACA TCGGCCTGAT GAAGGCGGTG GACAAGTTCG AGTATCGCCG CGGCTACAAG
TTCTCGACTT ATGCGACCTG GTGGATCCGG CAGGCGATCA CCCGCTCGAT CGCCGACCAG
GCGCGGACGA TCCGCATCCC GGTCCACATG ATCGAGACGA TCAACAAGCT GGTGCGGACG
GGGCGCCAGA TGCTGCACGA GATCGGCCGG GAACCGACGC CGGAAGAACT GGCGGAAAAG
CTGCAGATGC CGCTCGAGAA GGTTCGCAAG GTGATGAAGA TCGCCAAGGA GCCGATCTCG
CTCGAGACGC CGATCGGCGA CGAGGAAGAC AGCCAGCTCG GTGATTTCAT CGAGGACAAG
AACGCGATCC TGCCGCTCGA CAGCGCCATT CAGGAGAACC TGAAGGAGAC GACGACGCGG
GTTCTGGCCA GCCTCACCCC GCGGGAAGAG CGGGTCCTGC GGATGCGCTT CGGCATCGGC
ATGAACACCG ACCACACACT CGAAGAGGTA GGCCAGCAGT TCTCGGTCAC GCGCGAGCGC
ATCCGCCAGA TCGAGGCCAA GGCGCTGCGC AAGCTGAAGC ATCCCAGCCG CAGCCGCAAG
CTGCGAAGCT TCCTCGACCA GTAA
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| Protein sequence | MAVKDTDDGK PEDQDAETSL DMSQAAVKRM IAEARERGYI TYDQLNTVLP QDQVSSEQIE
DVMAMLSEMG INVIENEEAE EGEPAGELVE QGSGSREIAV AGTQGETLDR TDDPVRMYLR
EMGSVELLSR EGEIAIAKRI EAGRNTMIAG LCESPLTFQA ITIWRDELLS EDILLRDVID
LEATFGRSLD GDDDLDGPEI EEVEVTAAAP SPAPRRTNAS EPELDADGNP ISRAEEEDED
DEASAMSLAA MEAALKPRVL ETLELIARDY ATLAEMQTKR MSATLNDNIR FNPEDEAAYQ
KLRSEIVLLV NELHLHNNRI EALIDQLYGI NRKIMSINSA MVKLADAARI NRREFIEEYQ
GYELDPTWAE RMAQKSGRGW QTLMEKSRDK VEDLRGDMAQ VGQYVGVDIS EFRRIVNQVQ
KGEKEARQAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK
FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLVRT GRQMLHEIGR EPTPEELAEK
LQMPLEKVRK VMKIAKEPIS LETPIGDEED SQLGDFIEDK NAILPLDSAI QENLKETTTR
VLASLTPREE RVLRMRFGIG MNTDHTLEEV GQQFSVTRER IRQIEAKALR KLKHPSRSRK
LRSFLDQ
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