| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0659 |
|---|
| Symbol | |
|---|
| ID | 5083003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 660884 |
|---|
| End bp | 662770 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640482216 |
|---|
| Product | general secretion pathway protein E |
|---|
| Protein accession | YP_001166870 |
|---|
| Protein GI | 146276711 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.814938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.16836 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCTT CCAAGGCCGC GCCTTTGCCC GAGGCCCCGG TTCCCGACGC CTTGGGCGTG
ATGCTCCTGC GGCAGGGCCA CCTTGCGCCG CACCGGATCA TGGGCGCCCT CCGGCGCAGT
TCGGGCCATG CGGCGGGACT TGCCGACGTG CTTCTGGCCG AAGGGGCCAT GGATGAGGAG
GAAATCCTCG CCCTGACCGC CCGCCAGAGC GGCCTGCCGC TGCTCGATCC GGCAACGGGG
GCCGCCGATC CGCGGCTGAT CGACCGCCTC GGCGTTCGGA CCTGCCTGCG CGAGACGCTT
CTGCCGGTGC ATGACGTCGG CGGCGCCGTG CTTATCGCGG CCCCGTCGCC CGAGAGCTTC
CGGCGCCACG GCCCGCTGCT TGGGCAACTC TTCGGGCGCG TGATCCCCGT GCTGGCCACG
CGAACCGCGA TCGAGGGCGC GCTGCATGCG GCGCGCGCCA CAGCCATCGG ACTTGCGGCC
GAAACCCGCG TCACGCCCGG CGAAAGCTGC CGGGGCTGGC GCACCGGGCG GGCGACGCGG
CTTGCCCTCG GCACGGGCCT CGGCCTTGCC GCCGGGCTGA TGCTGGCGCC GGGCCTGGTG
GTGCTGGCGC TTTCCCTCTG GGCGCTGTTC GCCATGACCT GCGGCACCGC CCTGCGGATC
GCCACCGCCA TAGCCACGCT CCGACGCCGC CCGGCGGACC CGCCCTGCCC GCCCCTCCTG
CGGCTGCCCA TCGTCTCGGT GATCGTCGCC CTCTATCAGG AGGAGGATAT CGCCGGCCGC
CTGGTGGCGC GGCTCGGGCG GATCGACTAT CCGCATGACC GGCTCGAGAT CCTGCTTGTC
GTCGAAGAGG CCGATCTGCG CACCCGCAAG GCTCTGGTCG AGGCCCGCCT GCCGCCCTGG
ATGCGGATCG TGATCTCTCC CGCCGGCGCC ATCCGCACCA AGCCGCGTGC GCTCAACGTG
GCGCTCGACC ACTGCCGCGG CTCGATCGTG GGCGTCTATG ACGCCGAGGA TGCGCCCGAC
CCCGACCAGA TCCGCCGCGT GGTCGAGGGG TTCAGCCGCC GCGGCTCGCA GGTGGCCTGC
CTTCAGGGCC AGCTCGACTA TTACAACCCG CGGACCAACT GGCTCTCGCG CTGCTTCACC
ATCGAATATG CCTCCTGGTT CCGCCTGATG CTGCCGGGGC TCGACCGGCT CGGGCTTGCG
GTGCCGCTGG GGGGAACGAC GCTCTTCTTC CGCCGCGAGG CGCTCGAGGA TCTGGGAGCG
TGGGACGCCC ACAACGTCAC CGAGGACGCC GATCTCGGCA TCCGCCTCGC GCGCCATGGC
TACCGGACGG ACCTGATCGA CACGGTGACG GGCGAAGAGG CGAACTGCCG CGCGCTCCCC
TGGATCAAGC AGCGCTCCCG CTGGATCAAG GGCTTCATGA TGACCTGGGC CGTCCACATG
CGCGATCCGG TGCTTCTGTG GCGGCAGCTG GGCCCCTGGC GCTTTGCCGG CTTTCAGGTA
ATGTTCCTCG GCTCGCTGTC GCAGACGCTG CTGGCCCCGG TCCTGTGGTC GTTCTGGCTG
CTGGCCCTCG GCCTGCCGCA TCCGGTGACG CCGCTTCTGT CCACGCCGGC CCTCTGGGCC
ATCGTCGGCC TGCTCCTCGG AGCCGAGGGG ACGAGCATCG CGCTCGGCAT CCTCGCGCTG
CGCCTCACGC GGCACAAGCT CAACCCCCTG TGGGTGCCGA CGATGCATCT CTACAACCCG
CTGGCCACCT TTGCCGCCTA CAAGGCCCTG TGGGAGCTTC TCCGCGCCCC GTTCTACTGG
GACAAGACGC GCCACGGCCT CTTCGACGGC TCTTCGCGGG GGCCGGCGGC CTGGGTGCCG
CGGCTGAGGG GCCAACGCGC GGCCTGA
|
|---|
| Protein sequence | MPPSKAAPLP EAPVPDALGV MLLRQGHLAP HRIMGALRRS SGHAAGLADV LLAEGAMDEE
EILALTARQS GLPLLDPATG AADPRLIDRL GVRTCLRETL LPVHDVGGAV LIAAPSPESF
RRHGPLLGQL FGRVIPVLAT RTAIEGALHA ARATAIGLAA ETRVTPGESC RGWRTGRATR
LALGTGLGLA AGLMLAPGLV VLALSLWALF AMTCGTALRI ATAIATLRRR PADPPCPPLL
RLPIVSVIVA LYQEEDIAGR LVARLGRIDY PHDRLEILLV VEEADLRTRK ALVEARLPPW
MRIVISPAGA IRTKPRALNV ALDHCRGSIV GVYDAEDAPD PDQIRRVVEG FSRRGSQVAC
LQGQLDYYNP RTNWLSRCFT IEYASWFRLM LPGLDRLGLA VPLGGTTLFF RREALEDLGA
WDAHNVTEDA DLGIRLARHG YRTDLIDTVT GEEANCRALP WIKQRSRWIK GFMMTWAVHM
RDPVLLWRQL GPWRFAGFQV MFLGSLSQTL LAPVLWSFWL LALGLPHPVT PLLSTPALWA
IVGLLLGAEG TSIALGILAL RLTRHKLNPL WVPTMHLYNP LATFAAYKAL WELLRAPFYW
DKTRHGLFDG SSRGPAAWVP RLRGQRAA
|
|---|
| |