| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0405 |
|---|
| Symbol | |
|---|
| ID | 5082493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 399335 |
|---|
| End bp | 401653 |
|---|
| Gene Length | 2319 bp |
|---|
| Protein Length | 772 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640481957 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001166616 |
|---|
| Protein GI | 146276457 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG ACGCCATCCG CCGCATTCCC AAGCTGATCG CCGCCGAGAT CGCGGCCCGA
CCCGAGCAGG TCTCGGCGGC CATCGAGCTT CTCGACGGCG GCGCGACCGT TCCCTTCGTC
GCCCGCTACC GCAAGGAGGT GACGGGCGGC CTCGACGACA CGCAGCTGCG CACGCTCTCC
GAGCGGCTGG CCTATCTGCG CGAGCTGGAG GCGCGGCGCG AGACGATCCT GTCCTCGATC
CGCGATCAGG GCAAGCTGAC GGCCGAGCTG GAACAGGCCG TGGGCAAGAC CACGACCAAG
TCCGAGCTGG AAGACATCTA CCTGCCCTAC AAGCCCAAGC GGCGGACCAA GGCGATGATC
GCGCGCGAGA ACGGCCTCGG GCCGCTGGCC GAGGCGATCC TTGCCGACCG TGCGGCGGTG
CCGGCCGATC TGGCGAAGGC CTTTGTCACC GAAGCCGTGC CGGACGTGAA GGCCGCGTTG
GAGGGCGCGC GCGACATCCT GGCCGAGGGG CTGTCCGAGA ACGCGGACCT GCTGGGGCGG
CTCCGCGCCC ACATGAAGCA GGTCGGCCGC GTCTCGGCCA AGGTGGTCGA GGGCAAGGAG
GCCGAGGGCG CCAAGTTTTC GGACTATTTC GCCCATTCCG AGGCTTGGGC CACCGCTGCG
GGCCACCGGG TGCTGGCCAT GCTGCGTGGG CGGAACGAGG GCGTGCTGGT GCTCGATCTC
GAAGTCGATG CCGACGCGGC CCGCGGCGAA AGCCCGGCCG AGCGGATGGC CGGCATGGCG
CTTCAGGCGG CGGGCAAGGG GCCGGGCGAT CAGTGGCTGC GCGAGGCGGC GTCCTGGGCG
TGGCGGGTGA AGCTGAAGAC CTCGCTGACG CTGGATCTCA TGGCGGAGTT GCGCGAGCGG
GCCGAGGCCG AGGCGATCGG CGTCTTTGCG CGGAACCTCA AGGACCTGCT GCTGGCTGCG
CCGGCGGGGG GCAAGGTCAC GATGGGGATC GACCCGGGCA TCCGCACCGG CTGCAAGGTT
GCGGTGGTGG ATGCGACGGG CAAGCTGCTC GCCACCTCGA CCATCTATCC GTTCCAGCCG
AAGAACGACC TGCGCGGCTC GCAGGTGGAG CTTCTGAAGC TGATCCGCGC GCATGGGGTG
ACGCTGATCG CCATCGGCAA CGGAACGGCC AGCCGCGAGA GTGAGAAGAT GGTGGCCGAC
CTGCTGGCCG CCATGCCCGC CGAGATGCCG AAGCCCGTGA AGGTGATCGT CAGCGAGGCC
GGCGCCTCGG TCTATTCCGC GAGCGCGCTG GCGGCGGCCG AGTTCCCGGA TCTCGACGTG
TCCCTGCGCG GCGCGGTCTC GATCGCGCGC CGGCTGCAGG ATCCGCTGGC GGAACTGGTG
AAGATCGAGC CGAAGTCGAT CGGCGTCGGC CAGTATCAGC ATGATGTGGA CCAGCATCGC
CTCGGACGTT CGCTGGAGGC GGTTGTGGAA GACGCGGTGA ACGCGGTGGG GGTGGATCTG
AACACCGCCT CGGCGCCGCT TCTGGCGCGC GTCTCGGGCG TGGGGCCGGG GCTGGCCGAG
GCGATCGTGC AGCACCGCAA CACGAACGGC CCCTTTGCGA AGCGCCGCGA CCTGCTGAAG
GTCGCGCGCC TCGGCCCCCG CGCCTTCGAG CAGGCGGCGG GCTTCCTGCG CATCCCGAAC
GGGACCGAGC CGCTCGATGC CTCGAGCGTC CACCCCGAGG CCTATGACGT GGCGCGCAAG
ATCGTGGCCG CCTGCGGGCG CGACCTGCGC AGCCTGATGG CCGAGCCGCA GCGGCTGCGC
GCGCTCGATC CGCAGGACTT CACCGACGAC CGCTTCGGCC TGCCGACCGT CCGCGACATC
CTTGCGGAAC TGGAAAAGCC CGGCCGCGAC CCGCGCCCGA CCTTCAAGAC CGCGACCTTC
ACCGAAGGGG TCGAGGAGAT TTCGGACCTC AAGGTGGGGA TGCTGCTGGA AGGGACGGTG
ACGAACGTCG CGGCCTTCGG CGCCTTCGTC GATGTGGGCG TGCATCAGGA CGGGCTGGTG
CATGTCAGCC AGCTCGCCGA CCGTTTCGTG AAGGATCCGC ACGAGGTGGT GAAGGCCGGC
GACGTGGTGA AGGTCCGCGT GGTCGAGGTG GACGTGGCGC GCAAGCGCAT CGGGCTCACC
ATGCGCAAGG ACAGCGCCGA TGCCCGCGCG CAGGCGTCGG AGCGAAAGTC CGAGCCGCCG
CGCAAGGGCG GCAAGCCGCT GCCCCGGCAG GCCGCTCCGC GCGAGAGTGG CGCGAGCAAT
CCCTTTGCCG ATGCGCTGAA GGGATTCAGG CGGGACTGA
|
|---|
| Protein sequence | MSTDAIRRIP KLIAAEIAAR PEQVSAAIEL LDGGATVPFV ARYRKEVTGG LDDTQLRTLS
ERLAYLRELE ARRETILSSI RDQGKLTAEL EQAVGKTTTK SELEDIYLPY KPKRRTKAMI
ARENGLGPLA EAILADRAAV PADLAKAFVT EAVPDVKAAL EGARDILAEG LSENADLLGR
LRAHMKQVGR VSAKVVEGKE AEGAKFSDYF AHSEAWATAA GHRVLAMLRG RNEGVLVLDL
EVDADAARGE SPAERMAGMA LQAAGKGPGD QWLREAASWA WRVKLKTSLT LDLMAELRER
AEAEAIGVFA RNLKDLLLAA PAGGKVTMGI DPGIRTGCKV AVVDATGKLL ATSTIYPFQP
KNDLRGSQVE LLKLIRAHGV TLIAIGNGTA SRESEKMVAD LLAAMPAEMP KPVKVIVSEA
GASVYSASAL AAAEFPDLDV SLRGAVSIAR RLQDPLAELV KIEPKSIGVG QYQHDVDQHR
LGRSLEAVVE DAVNAVGVDL NTASAPLLAR VSGVGPGLAE AIVQHRNTNG PFAKRRDLLK
VARLGPRAFE QAAGFLRIPN GTEPLDASSV HPEAYDVARK IVAACGRDLR SLMAEPQRLR
ALDPQDFTDD RFGLPTVRDI LAELEKPGRD PRPTFKTATF TEGVEEISDL KVGMLLEGTV
TNVAAFGAFV DVGVHQDGLV HVSQLADRFV KDPHEVVKAG DVVKVRVVEV DVARKRIGLT
MRKDSADARA QASERKSEPP RKGGKPLPRQ AAPRESGASN PFADALKGFR RD
|
|---|
| |