| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0402 |
|---|
| Symbol | |
|---|
| ID | 5082490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 396871 |
|---|
| End bp | 398157 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640481954 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001166613 |
|---|
| Protein GI | 146276454 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGCC GGACGCGGCC CTTTGCGGCC TTCGAATGGA TGATCGCCTG GCGCTACCTG
CGCGCGCGTC GCGCCGAGGG CGGGGTCTCG GTCATGACCT GGATCAGCCT CGTGGGCATC
ACGCTTGCGG TCTTCGCGCT GATCGCCACG CTCTCGGTGC GGGCGGGCTT TCGGGCCGAG
TTCGTGGACA CGATCCTCGG GGCCAACGCC CATGTCACCG TCTATTCGGC GGGGCAGGTG
AGCGAGACGG GGCAGCTGAT CCGCGGCTTT GACGACTTCG ATCCGGTGGC CGAGCGGCTG
CGCACGGTGC CCGGAGTGGT GCGCGCGGCG CCCGTGGTGA AGGGGCAGGT GATGGCCACC
GCCAGCGGCC GGTCGAGCGG CGTCGAGGTC TTCGGGATGC GGCAGGCCGA TCTGGCGACC
ATACCGCGGA TCGGGCATGG CTCGGGTCAT GTCGGCGACG TCGGGCGCTT CGACGAGGGC
ATCGCCATCG GCTCGGGCGT GGCGCAGGAG CTGGGCGTGA CGGTCGGCGA CCGGATCCGG
CTGATCTCGC CCGACGGGGT GAAGACCGCC TTCGGCACCT CGCCGCGGGT CTCGGCCTAT
GAGGTCGTCT ATGTCTTCAC CGCCGGGCGC TACGACATCG ACCGGACGCG GATCTACATG
CCGCTGGCCG AGGCGCAGAG CTACTTCAAC CGCGAGGGCC GCGCCGACGA GATCGAGGTG
ATGGTGACGG ACCCCGAGGC GGTCGATGCG ATGGGGCCCG CGCTGATGCA GGCGGCGGGC
GAGGGCTCGA TGCTCTGGAC ATGGCGCGAT TCGGCCGGTG CCTTCCTGCG GGCGCTGACC
ATCGAGGACA ACGTGATGTT CGTGATCCTG TCGATCCTCG TGCTGATCGC CTCGATGAAC
ATCGTCTCGG GGCTGATCAT GCTGGTGAAG AACAAGGGCC GCGACATCGG CATCCTTCGC
ACCATGGGCC TGACCGAGGG CTCGATCCTG CGGGTCTTCT TCCTTTGCGG TGCCTCGACG
GGCCTGATCG GCACGGCCTT GGGCGTGGTG CTGGGCTGCC TCTTTGCCAT CTACATCGAC
CCGATCTTCT CGCTGGTGAA CTATGTCTCG GGCGGCGGGG TCTGGGATCC GTCGATCCGC
GGCATCTACG CCTTGCCGGC ACGGCTTCAG TGGCAGGATG TGCTGTCGGC GGTGTCGCTG
TCGCTCGCGC TGTCGTTCTT CGTCACGCTG ATCCCCGCGC GGCGGGCGGC CCGCATGAAC
CCGGTCGAGG CGCTGCGCTA TGAGTGA
|
|---|
| Protein sequence | MAGRTRPFAA FEWMIAWRYL RARRAEGGVS VMTWISLVGI TLAVFALIAT LSVRAGFRAE
FVDTILGANA HVTVYSAGQV SETGQLIRGF DDFDPVAERL RTVPGVVRAA PVVKGQVMAT
ASGRSSGVEV FGMRQADLAT IPRIGHGSGH VGDVGRFDEG IAIGSGVAQE LGVTVGDRIR
LISPDGVKTA FGTSPRVSAY EVVYVFTAGR YDIDRTRIYM PLAEAQSYFN REGRADEIEV
MVTDPEAVDA MGPALMQAAG EGSMLWTWRD SAGAFLRALT IEDNVMFVIL SILVLIASMN
IVSGLIMLVK NKGRDIGILR TMGLTEGSIL RVFFLCGAST GLIGTALGVV LGCLFAIYID
PIFSLVNYVS GGGVWDPSIR GIYALPARLQ WQDVLSAVSL SLALSFFVTL IPARRAARMN
PVEALRYE
|
|---|
| |