| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0378 |
|---|
| Symbol | |
|---|
| ID | 5082214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 373870 |
|---|
| End bp | 374967 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640481930 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_001166589 |
|---|
| Protein GI | 146276430 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.316614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG GCTTCTTCTG GGACGAGCGG TGCTTCTGGC ACCATGGCGG CAACTATGCG
CTGACGCTGC CGGTGGGCGG GCTCGTGCAG CCGGGCGGCG GCCTGCCCGA AAGCCCCGAG
ACCAAGCGTC GGCTGAAGAA CCTGCTCGAC GTGACGGGCC TCTCGGGCGA GCTGCGCATG
CTCCACGCCG CGCCCGCCAC CGAGGAGGAG CTGCGCCTTG TCCATCCGCA GGGCTACCTG
GCCGAGTTCA AGGCGCTCTC CGACCGAGGC GGCGGCGAGC TTGGGCTGCG CACGCCCTTC
GGCCGCGACG GCTACGAGGT GGCGGCGCTG TCGGCGGGCC TGGCCACGGC CGCCCTGCGG
CAGGTGCTCG AGGGGCGGCT GGCCAACGCC TATGCCCTCA GCCGCCCACC GGGGCACCAT
TGCCTGCCCG ACTGGCCGAA CGGCTTCTGC CTGCTCGCCA ACATTGCGAT CGCCGTCGAG
GTGGCCCTCG CCGAACGGCG GGCCGAGAGG GTCGCGGTGG TGGACTGGGA CGTCCATCAC
GGCAACGGGA CCGAGGCGAT CTTCCTCACC CGCCCCGATG TGCTGACGAT CTCGCTCCAC
CAGGAGCGGA ACTACCCACT CGACACGGGC GGCGCCGAGA TGCGCGGCGA GGGTGCGGGT
CTGGGGGCCA ACATGAACAT TCCCCTGCCG CCGGGGACCG GCCACCGCGG CTATCTCGAG
GCGATGGAGC GGCTCGTGCT GCCCGCGCTG CGCCGCCACC GGCCGGACGT CCTGGTGGTC
GCCTGCGGCT TCGACGCGGG CGCCCTGGAT CCACTCGGCC GGATGCTGGC TTCGGCCGAG
ACCTTCCGGG CCTTGACCCG GATGATGAAG GAGACCGCCG CCGACCTCTG CGGCGGCCGG
CTCGTCCTCG TCCACGAGGG CGGCTATTCC GAAGTCCATG TCCCCTTCTG CGGCCATGCC
GTGCTGGAGG AGCTGTCGGG CAGCGGCATC CACGCGCCCG ACCCGCTCGG CATGACCATC
CAGGCGCGCC AACCCGGCCC CGCCTTCGAT GCCTTCCTCA GCGCCCACCT GTCGGACCTG
GCAACTCACT TCGCCTGA
|
|---|
| Protein sequence | MTTGFFWDER CFWHHGGNYA LTLPVGGLVQ PGGGLPESPE TKRRLKNLLD VTGLSGELRM
LHAAPATEEE LRLVHPQGYL AEFKALSDRG GGELGLRTPF GRDGYEVAAL SAGLATAALR
QVLEGRLANA YALSRPPGHH CLPDWPNGFC LLANIAIAVE VALAERRAER VAVVDWDVHH
GNGTEAIFLT RPDVLTISLH QERNYPLDTG GAEMRGEGAG LGANMNIPLP PGTGHRGYLE
AMERLVLPAL RRHRPDVLVV ACGFDAGALD PLGRMLASAE TFRALTRMMK ETAADLCGGR
LVLVHEGGYS EVHVPFCGHA VLEELSGSGI HAPDPLGMTI QARQPGPAFD AFLSAHLSDL
ATHFA
|
|---|
| |