| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_0125 |
|---|
| Symbol | |
|---|
| ID | 5082533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | + |
|---|
| Start bp | 128630 |
|---|
| End bp | 130672 |
|---|
| Gene Length | 2043 bp |
|---|
| Protein Length | 680 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640481680 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_001166341 |
|---|
| Protein GI | 146276182 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCCCCAA GCCGCGACGC GCTCGACAGC TTGTGTGTTG CGGGCGGGCA CGGGCTTGGG
CAGATTGCGC CCATGTCGCG CCCCACGTCC GCCCCCGCCC GCCTCCGCAC GCTTCACCTC
GTGGCCTGCC TGATCCTGCC GCTGATCTGC GCGCCCCTGC CCGCGCGGGC CGAGGATCCG
GGCGCGCTCC GCCTTGCGCT CCGCGCGGCC TGGTCCAGGG ACTGGAGCGA CGCGGCGGCG
CAGGCGCGGG TTGCGGGGCC GCTCGCCCAG TCCCTCGTCG AGTGGCACCG GTTGCGCGCG
GGCGAAGGGC TTCTCGGCGA CTACGAGGGC TTTCTGGCGC GGCATCCCGA CTGGCCCGGG
CTGAAGCTCC TGCAGGACAA GGGCGAAGAG GCGGTGGCGC GCTCCTCGAC ACCCGCCCGG
GTGATCGACT ATTTCGGCTC GCGGACGCCG GCGACGGCAC AGGGGGCGCT TGCGCTTGCC
CGCGCACTGG CGGAATCGAG CCGTCGCCCC GAGGCCGAAG CCGTCATCCG CCGGGCATGG
ACGACGCTGG CCTTCACGGC CGAAGAGGAA TCGGCCGCGA TCGCCGCCTT TCCCGACGTG
CTGGCGCAGG CGCATGAGGC GCGGCTCGAC ATGCTTCTGT GGGAGAACCG GCCCGATCAG
GCGCGCCGGA TGCTGCCCCG CGTTCCGGAC GGCTGGAAGC GCCTCGCCGC GGCGCGTCTT
GCGTTGCGCG CCGATGCGGA CGGCGTGGAC GCGCTGATCG CGGCCGTGCC CGCGGCCCTC
TCATCGGATC CGGGCCTGGC CTATGAGCGA TTTCTCTGGC GCGCGCGGAA GGGGCGGACG
GCGGATGCGG TGGCGCTGCT CATCGAACGG TCCGAGAGCG TGGCGGGCCT TGGCAGCCCC
TCACTGTGGT CGGGCCGCCG TGCGGGGCTG GCGCGGGCGA TGAACGAAAG GGGCGAGGCG
CGCACGGCCT ACCGGATCGC GGCGAGCCAT CATCTCGAGG GCGGCGCGGA CTTTGCCGAG
CTGGAGTTCC TTGCGGGCTT CATCGCGCTG CGCAAGCTGG GCGATCCGGC GGCAGCCCTG
ACGCATTTCC AGCGCCTGCA GGCGGCGGTG CGGACGCCGA TCAGCCTGTC ACGGGCGCAT
TACTGGCAGG GCCGCGCGCT GGAGCAGCTG GGCCGCTACG ACGCGGCGGG GGCGGCCTTC
GCCGAGGGCG CGCGCTACCA GACGGCCTAT TACGGGCTTC TGTCGGCCGA GCGGGCGGGC
ATTCCGCTCG ATCCGGCCCT CATCTCGGTC CCGCGTGCGG GCGACTGGCG GCAAGCGGGC
TTTGCCTCTT CGTCGGTGCT GGCCGCGGGT CGGCTGCTGC TGGCGGCGGG TGAGCGCGAT
CTGGGCAAGC GGTTCCTGCT GCATCTGGCC GAGAGCCTCG ATGCCGGCGA TCTCGGGCGG
CTTGCGGAGA TGGCGCTGGA CATGGGCGAG CCGCATGTGG CGGTGCTGAT CGCCAAGCAG
GCGGCCGAGC AGGGGACGAT CCTGCCGCAA GCCTATTTCC CGGTTCCCGA TCTCGTGCCG
GGCGATGGGC TGCCGGTGAG CCGGGCGCTC GCGCTCTCGA TCGCGCGGCG TGAGAGCGAG
TTCAACCCGG TGGTCGTCAG CCCGGCCGGT GCCCGCGGTC TCATGCAGGT GATGCCGGGA
ACGGCCAAGC TGGTGGCGCC GAAGCTGGGG CTCGACTTCG AGCCTGCCCG GCTCACGCAG
GATGCGGCCT ACAACGTTCG ACTCGGCACG GCCTATCTCG CGCAGCTTGT CGAGGAGTTC
GGACCGTCGC TTGCGCTGGT GGCCTCGGGC TACAATGCCG GGCCCGGCCG GCCGAGGCGC
TGGATCACCG AGTTCGGTGA TCCCCGTTCC GGCGATGTGG ATCCGGTGGA CTGGGTCGAG
CAGATCCCCT TCGCTGAAAC GCGCACCTAC GTCATGCGGG TGACGGAGTC GGTGGTGATC
TATCGGGCGA AATTGCGTGG CAGCGGCGGC CCCGTCCGCA TCACCCCCGA GCTTACCGGG
TGA
|
|---|
| Protein sequence | MSPSRDALDS LCVAGGHGLG QIAPMSRPTS APARLRTLHL VACLILPLIC APLPARAEDP
GALRLALRAA WSRDWSDAAA QARVAGPLAQ SLVEWHRLRA GEGLLGDYEG FLARHPDWPG
LKLLQDKGEE AVARSSTPAR VIDYFGSRTP ATAQGALALA RALAESSRRP EAEAVIRRAW
TTLAFTAEEE SAAIAAFPDV LAQAHEARLD MLLWENRPDQ ARRMLPRVPD GWKRLAAARL
ALRADADGVD ALIAAVPAAL SSDPGLAYER FLWRARKGRT ADAVALLIER SESVAGLGSP
SLWSGRRAGL ARAMNERGEA RTAYRIAASH HLEGGADFAE LEFLAGFIAL RKLGDPAAAL
THFQRLQAAV RTPISLSRAH YWQGRALEQL GRYDAAGAAF AEGARYQTAY YGLLSAERAG
IPLDPALISV PRAGDWRQAG FASSSVLAAG RLLLAAGERD LGKRFLLHLA ESLDAGDLGR
LAEMALDMGE PHVAVLIAKQ AAEQGTILPQ AYFPVPDLVP GDGLPVSRAL ALSIARRESE
FNPVVVSPAG ARGLMQVMPG TAKLVAPKLG LDFEPARLTQ DAAYNVRLGT AYLAQLVEEF
GPSLALVASG YNAGPGRPRR WITEFGDPRS GDVDPVDWVE QIPFAETRTY VMRVTESVVI
YRAKLRGSGG PVRITPELTG
|
|---|
| |