Gene Saro_3792 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3792 
Symbol 
ID5077940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009427 
Strand
Start bp437671 
End bp439200 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content64% 
IMG OID640481515 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001166177 
Protein GI146276017 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGCAA GTAATCCGGG TTCGGCCGGG GCGGATACGC CCCCGCTCGT ATCGCGCAAT 
CGCACGCTGA TGCTGATCGG CACGATGGCG GCGATGATCA TGTACACGCT GGACACGACG
ATCGCCAACG TCGCGCTTCC GCACATGACC GCCTCTCTCG GGGCCACGCA GGATACGATC
ACCTGGGTTC TGACAAGCTA CGTCCTTGCC TCGGCGGTCG CGCTGCCGCT GGCGGGCTGG
CTGGTCGATC GGGTCGGCAT CCGCAACATG ATGCTCGCCT CTGTCCTCCT GTTCACCGCG
GCCTCGATGC TGTGTGGCGC AGCGCAGAGC CTTGAGCAGA TGGTGCTGTT CCGCGTGCTT
CAGGGTCTCG GCGGCGCGTT CCTGTCGCCG CTGGCACAGA CCGTCACCCT GGATTCAAGC
ACGGCGGCGG AGCGGCCGCG GATGATGGGC ATATATACCC AGGGGGTCAT GCTCGGGCCG
ATCACCGGCC CGATCATCGG CGGCTTCCTG ACGGACAACT ACAACTGGCG CTGGGTGTTC
TACGTCAACG TGCCCGTCGG CGTGCTGTGC TTCCTGCTCC TTCTCCTGTA CCTTCCCAAG
ACCCCGACGC GCGAGCGCAA GGTTGACCTG ACGGGCTGGC TGCTGGTGGC GCTGACGGTC
TCGTCGATCC AGCTCATCCT CGACCGTGGC CTCACCCTTG ACTGGTTCGC GTCGGCAGAG
ATCGTGACTT ACGCGGTCGT CGCCGGTGCC TGCGCGTGGC TCGGCTTGTT CCACCTTTCG
GGAAGCCGTA ATCCGCTGTT TCCGACGGCG CTGTTCCACG ACCGCAACTT CACGGTCGGC
CTTGCTTTCA TGTTCCTGAT CGGGCTGGTG ATGATGTCGG TCATGGCGCT CCTGCCGGGC
CTGCTCCAGC AGATCTATGG CTACACCCCG CTGCAATCGG GCATGCTTCT AGCGCCGCGC
GGTGTGGGGA TGCTGGCTTC GATCACGCTG TTCGGCAGGT TCATGGCAAA GGTCGACGCG
CGCATCCTGC TCGCCTTCGG CCTCTCGCTC ATGGGCGCAT CGATGTGGAT GATGACGGGC
TGGTCGACCG AGATGCCCCG CACCCCGATC ATCATGGCCG GCCTGCTTCA GGGCCTTGGC
CTGAGCTTCA CGTTCATGCC GATGAACCTG ATCTCATTCG CGACCCTGCC GCCGCAGTAC
CGCACCGACG CGTCGAGCCT TGGCAACCTG ATGCGCAACC TTGGTTCCTC GATCGGCATC
GCCGCCGCCT CGGTCGAACT GGCGCGCAAT ATCCAGGTCA ACCATGCCGA GCTGGGCGCA
CACGTCACCC GGTCTCTGGT GCCGTTCAAC CTCGACCGGA TCACCGCCTA TGGCGGCACC
GCCGAGACCG CGCTGCGGGT GATGGACGGC CTCGTCAACC AGCAGGCAGC GATGATCGCC
TACATCAACG ATTTCTACGC TATGGCGATG GCCTGCTTCG TCGCGATTCC CTTGCTCTTG
CTGGTGCGGA CAGGCGCGAA GAAGGGCTAA
 
Protein sequence
MSASNPGSAG ADTPPLVSRN RTLMLIGTMA AMIMYTLDTT IANVALPHMT ASLGATQDTI 
TWVLTSYVLA SAVALPLAGW LVDRVGIRNM MLASVLLFTA ASMLCGAAQS LEQMVLFRVL
QGLGGAFLSP LAQTVTLDSS TAAERPRMMG IYTQGVMLGP ITGPIIGGFL TDNYNWRWVF
YVNVPVGVLC FLLLLLYLPK TPTRERKVDL TGWLLVALTV SSIQLILDRG LTLDWFASAE
IVTYAVVAGA CAWLGLFHLS GSRNPLFPTA LFHDRNFTVG LAFMFLIGLV MMSVMALLPG
LLQQIYGYTP LQSGMLLAPR GVGMLASITL FGRFMAKVDA RILLAFGLSL MGASMWMMTG
WSTEMPRTPI IMAGLLQGLG LSFTFMPMNL ISFATLPPQY RTDASSLGNL MRNLGSSIGI
AAASVELARN IQVNHAELGA HVTRSLVPFN LDRITAYGGT AETALRVMDG LVNQQAAMIA
YINDFYAMAM ACFVAIPLLL LVRTGAKKG