| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3585 |
|---|
| Symbol | |
|---|
| ID | 5077734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009427 |
|---|
| Strand | + |
|---|
| Start bp | 205314 |
|---|
| End bp | 206483 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640481309 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001165971 |
|---|
| Protein GI | 146275811 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGC GCTCGCTTCT CCGCTGGCGC TGGGCCATCC TTGTCGCCGG GCTCCTCGTG
GCGGGCCTCG TCTTCGCGTT CTGGCCCCAA CCCACGGCCG TCGACGTCAC CCGCGTCAGC
AAGGGTCCGC TTGAAATCGG CGTGACTGAC GATGGCGTGA CCCGGGCCGA GGAATTCTAC
GTCGTCGCCG CGCCCGTCAG CGGCTACCTC TCGCGCATAG AGCTCGAACC GGGCGATCCG
GTGGCGCGCG GCGGGCTCAT CACCACCATC GGCAGCAGGC CCGCCGCCCC GCTCGATCCG
CGCGCCAACG CCGAACTGCG CGCCGCCCTT GCCGCCGCCC GCGCCGCGCA GGGCAACGCA
TCGGCCTCGC TCTCCCAGGC GCGGCGCGAT CTTGCCCGCT CGCAGGCGCT GGCTGATCGC
GGCTTCCTCC CGCGCGCCCA GCTCGAAGCC GCGCGCACCC GCGTCCTCAC TGCCGAAGCC
GCCGTCGCCC AGGCCCGCGC CGAAGCCTTG CGCATCTCGG CGGAGCTGAC CCCGCCCGCC
GGGCGCGGCA ATGCCGCCGC CGTTCCGGTC CGCGCGCCGG TCGCCGGCAC GATCCTCTCG
GTCATCACCG AAAGCGAAGG TGCCGTCGCA GAAGGCACGA CCCTCGTCAC CATCGGCGAT
CCGCGCCGGA TCGAAGTCGT CGTCGATCTC CTCTCGCGCC AGGCGGTGCG GGTAAAGCCC
GGAGATCGCG TGAAAATCAC AGAATGGGGT GGGTCGGCGC CGCTTACCGG CACGGTCCGC
CGGATCGAAC CGTTCGGCCG CCTCAAGGTC TCGGCCCTCG GCATAGAAGA ACAGCGCGTC
AACGTCGTGA TCGGCTTCGA TGAAGCCTCG CTCGGCGCCG CGGCGCGTCT CGGCCACGGC
TACCAGATCG ATGCCACCAT CGTCGTCTGG AGCCGCCCCG ACGCCGTGCG CCTGCCCATC
GGTGCGCTCG TCCGGGGCAA GGATGGTCAA TGGCAGGTCT TCACCGCAAC CGGTGGCCGC
GCCGTGCTGC GCCCGGTCCG CATCGGCCAG ATCAACGACG AATGGGCCGA AGTCCTCGCC
GGCCTCGCCC CCGGCGACCA GGTCATCGCC AACCCCTCAC CCTCCCTCGC CGACAACACC
CGCATCAAGC CCCGCGCCGC GTCGCAATAG
|
|---|
| Protein sequence | MTLRSLLRWR WAILVAGLLV AGLVFAFWPQ PTAVDVTRVS KGPLEIGVTD DGVTRAEEFY
VVAAPVSGYL SRIELEPGDP VARGGLITTI GSRPAAPLDP RANAELRAAL AAARAAQGNA
SASLSQARRD LARSQALADR GFLPRAQLEA ARTRVLTAEA AVAQARAEAL RISAELTPPA
GRGNAAAVPV RAPVAGTILS VITESEGAVA EGTTLVTIGD PRRIEVVVDL LSRQAVRVKP
GDRVKITEWG GSAPLTGTVR RIEPFGRLKV SALGIEEQRV NVVIGFDEAS LGAAARLGHG
YQIDATIVVW SRPDAVRLPI GALVRGKDGQ WQVFTATGGR AVLRPVRIGQ INDEWAEVLA
GLAPGDQVIA NPSPSLADNT RIKPRAASQ
|
|---|
| |