Gene Saro_3559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3559 
Symbol 
ID5077708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009427 
Strand+ 
Start bp175909 
End bp176922 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content66% 
IMG OID640481283 
Producttransketolase, central region 
Protein accessionYP_001165945 
Protein GI146275785 
COG category[C] Energy production and conversion 
COG ID[COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00351586 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAA TGATGTACCG CGACGCCGTC GTCTCGACGA TCGCAGAGGA AATGGAGCGC 
GACGAGAACG TCGTCATGCT CGGTGAAGAC ATTGTCGGCG GCATGGGCAC GCCGGGTGGG 
CCCGAGGCCA TCGGCGGCAT CTGGTCGACC TCCACCGGCC TGTTCGGCAA GTTCGGCGCG 
GACCGCGTGA TCGACACGCC GATCTCGGAA AGCGCGATCA TGGGCGCGGC GGCAGGCCTT 
GCGCTTTCGG GCAAGCGCCC GATCGCCGAG CTGATGTTCG CCGACTTCAT CGGCGTTTCC 
CTCGACCAGA TCTGGAACCA GCTCGCCAAG TTCCGCTACA TGTTCGGCGG CAAGACCAAG 
TGCCCGGCAG TGATCCGCAT GGCCTATGGC GCGGGCTACA ACGCCGCCGC GCAGCATAGC 
CAGGCGGTCC ACCAGATCCT GACCGGCATG CCGGGCCTCA AGGTGGTCAT GCCGACCACG 
CCTGCCGACG TGAAGGGCCT GCTGCGCACC GCGATCCGCG ACGACGATCC GGTGATCTTC 
CTCGAGCACA AGGCGCTCTA CGGCGTTTCC GGCGAAGTGC CCGACGATCC GGACTTCATG 
ATCCCGTTCG GCCACGCCCG CCTTTCGCGC GCCGGCCAGG ACGTGACGAT CGTCTCGACC 
GGCCTGCTGC TGGGATTCTG CGAGGCGGTG GCCGACAAGC TTGCCGCCGA GGGCATCGGC 
TGCGACGTGA TCGACCTGCG CACCACCAGC CCGATCGACG AGGAAACGAT CCTCGATTCG 
GTCGAGGTGA CCGGCCGCCT CGTCGTCGTC GACGAAGCGC CGCCCCGGTG CAGCCTTGCG 
TCCGACATCT GTGCGACAGT TGCCGAAAAG GGCTTCGCCG CGCTCAAGGC TCCGCCGCAG 
GCGGTCAACC CGCCACACAC CCCGATCCCG TTCGCGCGTG AGCTGGAATC TGCCTACCTT 
CCTTCGGTCG ACAAGATCGA AGCGGCGGTG CGCAAGGTTC TGGCTTACCG CTGA
 
Protein sequence
MAKMMYRDAV VSTIAEEMER DENVVMLGED IVGGMGTPGG PEAIGGIWST STGLFGKFGA 
DRVIDTPISE SAIMGAAAGL ALSGKRPIAE LMFADFIGVS LDQIWNQLAK FRYMFGGKTK 
CPAVIRMAYG AGYNAAAQHS QAVHQILTGM PGLKVVMPTT PADVKGLLRT AIRDDDPVIF 
LEHKALYGVS GEVPDDPDFM IPFGHARLSR AGQDVTIVST GLLLGFCEAV ADKLAAEGIG 
CDVIDLRTTS PIDEETILDS VEVTGRLVVV DEAPPRCSLA SDICATVAEK GFAALKAPPQ 
AVNPPHTPIP FARELESAYL PSVDKIEAAV RKVLAYR