| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3554 |
|---|
| Symbol | |
|---|
| ID | 5077703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009427 |
|---|
| Strand | - |
|---|
| Start bp | 170377 |
|---|
| End bp | 171999 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640481278 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001165940 |
|---|
| Protein GI | 146275780 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGG GCTGGGATTA CATCGTCGTC GGCGCGGGCT CCGCCGGATG CGTCGTGGCC
GAAAGGCTGA GCGCCGATGG CCGCCACCGC GTGCTCGTGC TCGAGGCGGG CGGCGAGAAC
GACGGTTTCT GGGTGACCCT GCCCAAGGGT GTGGCCAGGC TCGTCACCAA TCCCGACCAC
ATCTGGGCCT ATCCGGTCGC TCAGCCCCGC GCGGCGGGGA TGCCCGCGAA CGAGGTCTGG
ATCAGGGGCA AGGGTCTTGG CGGTTCGTCC GCCGTCAACG GCATGATCTG GAGCCGGGGC
GAGCCGGCCG ACTATGATGC GTGGGAGCAG GCCGGCGCCA CCGGCTGGAA TGGCGCTGCC
ATGACCGAGG CCTTCCTCGC GCTCGAGGAT CACGCCGCCG GTCCCGGCCC GATGCGCGGC
AGCGGCGGCC TCGTCCACGT CGATCCGGCA ATCTACACCT ATCCGCTGGC CGATCGCATG
ATCGCGGCGG GCGAGTCCTG TGGCATGGCC CGCGTGGCCG ATCTCAACGA ACGCGGCGGT
CCGCGTGTCG GCCTCTACAG CCACAATATC CGGAAGGGCC GCCGCCAAAG CTCGGGCCGC
ACCTTCCTCG CCGCGGCGCG CCGCCGCGCC AACGTCAGGG TCGTGACCGG CGCGATTGCC
GAACGCGTCG TGACACGCGA TGGCCGCGCG GTCGCGGTGG AGGCGCGCGT CAACGGCGTC
CTCACCCGGT TCGATTGCGC GGGCGAGGTA ATCGTCAGCG GCGGCGCGAT GGAAAGCCCG
CTCCTGCTCC AGCGCTCGGG CATCGGCGAT GGCGCCCGCC TTCGCGCCGT CGGGATCGAA
CCTCTGGTCC AGTCGCCCGA CGTGGGCGAA CGCCTGGTCG AGCATCTCGG TTTTTCCATG
CCCCACCGCC TCGTCGGCGA GCGCGGTACC GGCGGCTTGC TGCGGGGGCC GGGCCTGGTC
GCGGCAGTCC TGCGCTATGC CCTGACGCGC GGCGGCATCA TGGCGACCGG TCCGTTCGAG
GTCGGCGCCT TCTGCAACGT CGCCCATCCC GATGGCCGCG TCGATGCCCA GCTCTATCTT
GGCGGCTATA CCTTCGAAGT CTCGGACGAT GGCAACCCGG TGCCGCTCGA CAAGATCTCC
TCGCGCCCCG GCATGACGAT CTACGGCCAG CTCCTGCGCC TGACCAGCGA GGCGTCGGTT
CGCGCCGCCG GCCCGGATGC CGCAACCGCG CCCGTGATCC TGCCCAACTG GCTCTCGACC
GAACACGACC GCAAGTCCGC CGTCGCCATG GTTCGCGCCA TGCGCCGTTT CGTGCGCACC
GCGCCGCTTG CCGAGGTGGT GGGAGAGGAA ATGATACCGG GCGCCGCGGT CGAAAGCGAC
GAGGCCATTC TCGACGCTTT CCGCCACCTC GCCAGTTGCG GCCTCCATGC CATAGGCTCC
TGCCGCATGG GCTCGGACCA GCGCGCGGTG GTCGATCCGC GCCTCAGGGT GCGCGGGGTC
GATGGCTTGC GCGTCGTCGA TTGTTCGGTC ATGCCCGGAC ACATCACCGG CAACACCAAC
GCGCCGGCCA TGGCCCTCGG TTATCGTGCC GGGAACCTGA TCCTCGAGGA TCGCAAGGGA
TGA
|
|---|
| Protein sequence | MEQGWDYIVV GAGSAGCVVA ERLSADGRHR VLVLEAGGEN DGFWVTLPKG VARLVTNPDH
IWAYPVAQPR AAGMPANEVW IRGKGLGGSS AVNGMIWSRG EPADYDAWEQ AGATGWNGAA
MTEAFLALED HAAGPGPMRG SGGLVHVDPA IYTYPLADRM IAAGESCGMA RVADLNERGG
PRVGLYSHNI RKGRRQSSGR TFLAAARRRA NVRVVTGAIA ERVVTRDGRA VAVEARVNGV
LTRFDCAGEV IVSGGAMESP LLLQRSGIGD GARLRAVGIE PLVQSPDVGE RLVEHLGFSM
PHRLVGERGT GGLLRGPGLV AAVLRYALTR GGIMATGPFE VGAFCNVAHP DGRVDAQLYL
GGYTFEVSDD GNPVPLDKIS SRPGMTIYGQ LLRLTSEASV RAAGPDAATA PVILPNWLST
EHDRKSAVAM VRAMRRFVRT APLAEVVGEE MIPGAAVESD EAILDAFRHL ASCGLHAIGS
CRMGSDQRAV VDPRLRVRGV DGLRVVDCSV MPGHITGNTN APAMALGYRA GNLILEDRKG
|
|---|
| |