| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3522 |
|---|
| Symbol | |
|---|
| ID | 5077671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009427 |
|---|
| Strand | + |
|---|
| Start bp | 135445 |
|---|
| End bp | 137049 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640481246 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001165908 |
|---|
| Protein GI | 146275748 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.653851 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACCGGC GCGATGCGAT GAAGTCGGCC GCCATTGCCG CGCTCGGCCT TGCAACGCCG
CTGCCCGCGC TTGCCGGGCC GGCTACCGCT GCCACCGCTT CCGCGCCCCG CTGGAAGCGC
GGGCTCGACA ACCAGCGCAT CGCCGACCTC GGGGATGGCA CGTTCCTCAA TCCGGTCCTC
GCCGGCGACC GCCCCGACCC CGCCATCCTC AAGGACGGCA AGGACTACTA CCTCACCTTC
TCCGGCTTCG AGAGCTATCC CGGCCTGCTC ATCTGGCACT CGCGCGATCT TGTGAACTGG
GCGCCGAGGA AGCCCGCGCT TCACAGGAAC ATCGGCTCGG TCTGGGCGGT CAGCCTCGAC
CGGCACAAGG GTCGCTACTA CCTCTACATC CCGGTCAAGG CCTCTCCGCA GAACGACACC
TTCGTGATCT GGGCCGACCA TATCGACGGA CCGTGGAGCG AACCCAAGCC CCTCGGCCTG
CCCAACCATA TCGACCCGTG CCATGCGGTG GGCGAAGACG GCTCGCGCTG GCTGTTCCTA
TCCGGCGGAG ACCGCGTGCG TCTCTCGGAC GACGGCCTCA GCCTCGCCGG CCCCGTGGAA
CACGTCTACG ATCCCTGGCG CTATCCCGAG GAATGGGACG TCGAGGGCTT CGCGCCCGAA
GGCCCCAAGA TTCACCGCGT CGGCAAGTGG TTCTACATGC TGACCGCCGT GGGCGGAACC
GCAGGACCAC CCACCGGCCA CATGGTCATC GCCGCGCGCT CGCGCTCGAT CCACGGGCCG
TGGGAACAGC ATCCCGGCAA TCCGCTGGTG CGCACCACCG ACATCCGCGA AGCCTGGTGG
TCGCGCGGCC ACGCCAGCCT CGTCGAAGGG CCGGACCGCA CCTGGTGGAG CCTCTATCAC
GGCTTCGAGA ACGGCTTCTG GACGCTGGGT CGCCAATGCC TGCTCGATCC GGTGGAATGG
ACCGCCGATG GCTGGTTCCG CATGACGGGC GGCGACCTCT CGCGCCCCCT CGCCAAACCG
AAGGGCGGCG AGGCGCTGCC CCATGGCATG GCGCTGTCGG ACGACTTCTC CCGCCTGCAA
CTGGGCACCA AGTGGTCGTT CTTCCGTCCT TCGCCGGACG AGGCAAGCCG CGCGCGCGTG
GTCGGCAACA CCCTGCTCCT CAAGGGCAAG GGCCTCGCCC CATCGACCGG TTCGCCGCTC
CTCCTGATCG CGGGCGACAC GTCCTACCGG TTCGAATGCG ACATCGAACT CGCGCCCGGC
GCCACGGCGG GCCTGGTGCT GTTCTACGAC GACAAGCTCT ACGCCGGCCT CGGCTTCGAT
GCCGAACGCT TCGTCACCCA CCAGTACGGG ATGGAACGCG GCCGCCCCGC CAATCCCCAC
GGCACCGCCA TGCGCATCCG CGTGACCAAC CGGCGACATA TCGTCAGCTA CCACACTTCG
GGCGACGGCG GGCAGACGTG GCGCAAGTTC GACCGCGGCA TGGAAGTGTC AGGCTACCAC
CACAACGTGC GCGGCGGTTT CCTCATGCTC CGCCCCGGCC TCTACGCTGC GGGCCCCGGC
GAGACCAGGT TCCGCAATTT CACCTTCACT GCACTGGAAG ACTGA
|
|---|
| Protein sequence | MDRRDAMKSA AIAALGLATP LPALAGPATA ATASAPRWKR GLDNQRIADL GDGTFLNPVL
AGDRPDPAIL KDGKDYYLTF SGFESYPGLL IWHSRDLVNW APRKPALHRN IGSVWAVSLD
RHKGRYYLYI PVKASPQNDT FVIWADHIDG PWSEPKPLGL PNHIDPCHAV GEDGSRWLFL
SGGDRVRLSD DGLSLAGPVE HVYDPWRYPE EWDVEGFAPE GPKIHRVGKW FYMLTAVGGT
AGPPTGHMVI AARSRSIHGP WEQHPGNPLV RTTDIREAWW SRGHASLVEG PDRTWWSLYH
GFENGFWTLG RQCLLDPVEW TADGWFRMTG GDLSRPLAKP KGGEALPHGM ALSDDFSRLQ
LGTKWSFFRP SPDEASRARV VGNTLLLKGK GLAPSTGSPL LLIAGDTSYR FECDIELAPG
ATAGLVLFYD DKLYAGLGFD AERFVTHQYG MERGRPANPH GTAMRIRVTN RRHIVSYHTS
GDGGQTWRKF DRGMEVSGYH HNVRGGFLML RPGLYAAGPG ETRFRNFTFT ALED
|
|---|
| |