| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3520 |
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| Symbol | |
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| ID | 5077669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009427 |
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| Strand | + |
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| Start bp | 131472 |
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| End bp | 134345 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640481244 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001165906 |
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| Protein GI | 146275746 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAGTC ACGTTTCGCG CGTTTCGCTT TTGAAGATGG CCCTGCTGGC CGGTGGCGCA
TTTGCCGCGC CGAGCCTTGC TTTCGCCCAG GACGCGACCG CCGCTCCCGA ACCCCAGGCC
GTAGCCGAAG ATGCAGCGCC CCCGACCGAC GCCATCGTCG TCACCGGCTT CCGCCAGTCG
CTCCAGGCTG CGATCAACGT CAAGAAGAAC GCCGTCGGCG CGGTCGACGC CATCGTTGCC
GAAGACATTG CAAAGTTCCC CGACCAGAAC CTTGCCGAAT CGCTACAGCG CATTCCCGGC
ATCTCGATCT CGCGCGATGC CGGCGAAGGC CGCGCGATCA CCGTGCGCGG TCTGTCCAGC
CAGTTCACCC GCGTCCGCGT CAACGGCATG GAAACGGTCG CCACCTCGAC CGACGGCGCC
TCGGCGAACC GCGACCGCGC GTTCGACTTC AACGTCTTCG CTTCGGAACT GTTCAGCTCG
ATCGTCGTGC ACAAGACCGC CGAAGCCAGC CTCGACGAAG GCTCGCTCGG CGCGGTGGTG
GATCTCAACA CCGGCAATCC GCTGGGTGGC AAGGCCGGCT TCACCGGCGT CGCATCGGTC
GTCGGCACTT ACAACGACCT GTCGGACTAC GTCGGCCCGC GCCTTGCCGG GCTGCTGAGC
TGGCGCAACG ACGCCGGCAC TTTCGGCATC TCGCTGTCCG CCGCGTACCA GAAGACCCGC
GTGCTGGAGC TTGGCAACAA CTCGGTCCGC TGGGCCCAGG CGCGCTTCGA CTCGGTCGAT
GGGACCCCGT GCTTCACCCG TCCCAACAGC GGCGGCACTT ACGTCGAGAG CGATGCCTGC
GACGAGGCCG CCCTCGCCTT CCACCCGCGC ATCCCGCGCT ACGGCGAAGT GAAGCATGAC
CGCGAGCGCC TCGGCATCAC CGGCTCGGTC CAGTTCGCGC CAACCGATGC GACGAAGTTC
TCGATCGACG GCCTGTTCTC CCGCTTCGAC GCGAAGCGCG AGGAGCAGTG GGGCGAAGTC
CTGCTGCGCT CCAACGAGCG TTCGATCGAC GTGGTCGACC CGGTCTACGA CGACAACGGC
AACATGGTCT CGGCCACGCT GAACGATGCC TGGGTGCGTA CCGAGCACTA CCTGCGCAAG
AGCCGCACCG AATTCTATCA GGTGGGCGGC ACCTGGGACC AGGACATCGG CGACAGCCTG
CGCTTCACCC TGCTCGGCGG CTTCTCCAAG TCGAATGCCG AAATCCCGGT CGAGACCACG
ATGATCTTCG ACGACCGCGA TGCCCAGGGC TATTCGTTCG ACTACACCGA CATGAAGCAC
CCGAAGCTGA CCTTCGGCAC CAGCGTCACC GATCCGGCGA ACTTCCAGCT CGCCGAAATC
CGCGACCGCC CGTCGAGCGT CGTGAACCGC TTCAAGACCG TGCAGCTTCG TACCGAATGG
GACGTGGCCG AAGGCTTCAC GATCAAGGCG GGCGGCATGT GGCGCCGGTT CAACTTCGAT
ACCGAAGCCT TTACCCGCGA CACCGCGGTC TGCGGCAACG GCGGCGTCGA CCGCATCTTC
GGCACGATCA ATTGCTCCGC CTCCTCGGTG TTCGGCCCCA CCGCTGTCTA TGGCATCCCG
GTGACGGCGG CGCTTGGCCA GGTGTTCAAC CTCGGCAACG CGGGTCAGCC CGCGGGCAAC
ACCAATTCGT GGCTGGTGCC CAATCTCGAC GCCACGACCG CGCTGACCAA GCTCTACGAA
CGCCCGCTGG CTCTCGATGC CGGCAACAAC CGGGGCGTGC AGGAGACCAC CAAGGGCGGC
TATCTCCAGT TCGACGCCAA GGGTGAGCTG CTGGGCCTGC GCTATGCGCT CAATGCAGGC
ATGCGGTACG TCAAGACCGA CCAGTCCTCC TACGGTCTCG TCGGCTCGGT GCAGACCACG
GTCAAGCGCA GCTACGAAGA CTGGCTGCCC TCGGCCAACC TCGCGCTCTA CCCCACCGAG
AACGTGATCG TGCGCGCCGC CATCGCCGAC GTGATGACCC GCCCGACGCT CGGTTCGCTG
ACGCCCGGCG GCTCGGCCGA CGGCTTCAAC TACCGCGTCA GCACCGGCAA CCCCTATCTG
GAACCCTATC GCGCCACCAA CTACGACCTC GGCGTGGAAT GGTACTTCGC TCCCCAGGCC
GTGCTTTCGG CGGCATGGTT CAAGAAGGCG GTGCACACCT TCACCCGCAG CGCCTCGATC
ACCGGTCTGA CCTACGCCCA GACCGGCGCG CCGATTTCCT CGCTCAGCCC GAACTCGCCG
GCTGCGCTGA ACCCGTCGCA GTTGCTCGAG GATCGCTGGA CGCTGGCAAC CACGGTCAAC
GGCGAGGGTG CCACGCTCAA GGGCTGGGAA TTCGCCGCGC AGGTGCCCTT CAAGATCTTT
GCCGAAGGCT TCCTCGGGAA CTTCGGCGTG ATCGCCAACG CCACCTTCAT CTCGTCGAGC
GCGGAATACG AACTCCAGGG CCCGATCACC GTCGCCCGCC TGCCCAACGG CAACCTCGGC
CCGCTCAACA ACGTGACGCT CACCAGCACG CTCGCGAACG TGTCGAAGCG CGCCTACAAC
GGCACGCTCT ACTACGATGA CGGCCGCTTC TCCGCGCGCG TCATGGGCAC CTACCGCAGC
GCCTACCACG AAGGCGCCAG CGGCACCGGC AACCTGCTCG AAGGCTACGG CTCGATGTGG
AACGTCGACG CTTCGGTTCG CTACAAGGTG AACGACTGGC TGGAAGTCTC GGTCGAGGGC
AACAACCTCC TCGACACCTA TCGCTACCGC TACACCGACA TAGAAACGCA GCGGAATTAC
GAGAACAATC ACTTCGGGCG CAACATCCTG GTGGGCGCGC GCCTCAAGTA CTGA
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| Protein sequence | MPSHVSRVSL LKMALLAGGA FAAPSLAFAQ DATAAPEPQA VAEDAAPPTD AIVVTGFRQS
LQAAINVKKN AVGAVDAIVA EDIAKFPDQN LAESLQRIPG ISISRDAGEG RAITVRGLSS
QFTRVRVNGM ETVATSTDGA SANRDRAFDF NVFASELFSS IVVHKTAEAS LDEGSLGAVV
DLNTGNPLGG KAGFTGVASV VGTYNDLSDY VGPRLAGLLS WRNDAGTFGI SLSAAYQKTR
VLELGNNSVR WAQARFDSVD GTPCFTRPNS GGTYVESDAC DEAALAFHPR IPRYGEVKHD
RERLGITGSV QFAPTDATKF SIDGLFSRFD AKREEQWGEV LLRSNERSID VVDPVYDDNG
NMVSATLNDA WVRTEHYLRK SRTEFYQVGG TWDQDIGDSL RFTLLGGFSK SNAEIPVETT
MIFDDRDAQG YSFDYTDMKH PKLTFGTSVT DPANFQLAEI RDRPSSVVNR FKTVQLRTEW
DVAEGFTIKA GGMWRRFNFD TEAFTRDTAV CGNGGVDRIF GTINCSASSV FGPTAVYGIP
VTAALGQVFN LGNAGQPAGN TNSWLVPNLD ATTALTKLYE RPLALDAGNN RGVQETTKGG
YLQFDAKGEL LGLRYALNAG MRYVKTDQSS YGLVGSVQTT VKRSYEDWLP SANLALYPTE
NVIVRAAIAD VMTRPTLGSL TPGGSADGFN YRVSTGNPYL EPYRATNYDL GVEWYFAPQA
VLSAAWFKKA VHTFTRSASI TGLTYAQTGA PISSLSPNSP AALNPSQLLE DRWTLATTVN
GEGATLKGWE FAAQVPFKIF AEGFLGNFGV IANATFISSS AEYELQGPIT VARLPNGNLG
PLNNVTLTST LANVSKRAYN GTLYYDDGRF SARVMGTYRS AYHEGASGTG NLLEGYGSMW
NVDASVRYKV NDWLEVSVEG NNLLDTYRYR YTDIETQRNY ENNHFGRNIL VGARLKY
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