| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3493 |
|---|
| Symbol | |
|---|
| ID | 5077642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009427 |
|---|
| Strand | + |
|---|
| Start bp | 96177 |
|---|
| End bp | 101525 |
|---|
| Gene Length | 5349 bp |
|---|
| Protein Length | 1782 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640481217 |
|---|
| Product | GAF sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001165879 |
|---|
| Protein GI | 146275719 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0298684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATC TGGCAACGAA GGCGGAACCG GCAATCGGTC GCCATGAACT GGTCAGCGCC
CTGCGCAAGC TGCGCAACGG CGATTTCACA GTCTCGTTGC CTGATGATGG GTCGGAGATC
GCGACGCTCT TCAACGAGGT CGTCGGGCTC AATCGCCGGA TGACCGACGA ATGCCAGCGC
CTCTCGCGCG TGGTCGGCAA GGAAGGCAAG ATCGGGCACC GCGCCTCGGT ACGCGGCGCA
CAGGGCGACT GGGACCTCAC GCTCTGCGCG ATCAACGAAT TGATCGACGA CATGGTCCAG
CCCACGACCG AAGTCGCGCG CGTGATCGGC TCCGTGGCCA AGGGCGACCT GTCGCAAACC
ATGGCGGTCG AAATCGAGGG CCGCGCTCTG CGAGGCGAGT TCCTGCGCAT CGGCAAGGTC
GTGAACACGA TGGTCGAGCA GCTGGCAAGC TTCGCCTCCG AAGTGACCCG CGTCGCGCGC
GAGGTCGGCA CCGAAGGCAA GCTGGGCGGG CAGGCCAACG TCAAGGGCGT GGCCGGCACA
TGGAAGGACC TGACCGAGAA CGTGAATCTC ATGGCCGCGA ACCTCACCGG CCAGGTCCGC
AACATCGCAG AGGTCACAAC CGCAGTGGCG CTCGGCAATC TCTCCAAGAA GATCACCGTC
GACGTGAAGG GCGAGATCCT CGAGCTTAAG AACACGATCA ATACCATGGT CGACCAGCTC
AACGGCTTCG CCTCGGAAGT GACCCGCGTC GCGCGCGAGG TCGGCACCGA AGGCAAGCTC
GGCGGGCAAG CGCAGGTGCC GGGCGTCGCC GGCACCTGGA AGGACCTTAC CGACAACGTG
AACCTCATGG CCGCGAACCT CACCGGCCAG GTCCGCAACA TCGCCGAGGT CACGACCGCC
GTTGCCTCGG GCGACTTGTC CAAGAAGATC ACCGTCGACG TGAAGGGCGA AATCCTCGAG
CTGAAGAACA CCATCAACGT CATGGTCGAC CAGCTCAACG GCTTCGCCTC GGAAGTGACC
CGCGTCGCGC GCGAGGTCGG CACCGAGGGA AAGCTCGGCG GACAGGCGCA GGTGCCCGGC
GTCGCCGGCA CGTGGAAGGA CCTTACCGAC AACGTGAACC TCATGGCCGA CAACCTCACC
GGCCAGGTCC GCAACATCGC CGAGGTCACC ACCGCCGTCG CCTCGGGCGA CTTGTCGAAG
AAGATCACCG TCGACGTGAA GGGCGAAATC CTAGAGCTGA AGAACACCAT CAACGTCATG
GTCGACCAGC TCAACGGCTT CGCCTCGGAA GTGACCCGCG TCGCGCGCGA GGTCGGCACC
GACGGCAAGC TCGGCGGTCA GGCGCAGGTG CCGGGCGTGG CGGGTACGTG GAAGGACCTT
ACCGACAACG TGAACCTCAT GGCCGACAAC CTCACCGGCC AGGTCCGCAA CATTGCCGAG
GTCACCACCG CCGTCGCCAA GGGCGACCTG TCGAAGAAGA TCACCGTCGA GGTGCGCGGC
GAAATCCTCG AGCTGAAGAA CACGATCAAC ACCATGGTCG ACCAGCTTAA TTCCTTCGCC
TCGGAAGTGA CTCGCGTCGC GCGCGAGGTC GGCACCGAGG GACGGCTTGG CGGTCAGGCG
CGCGTGCCGG GCGTGGGCGG CACGTGGAAG GACCTTACCG ACAACGTCAA CGCCATGGCC
GGCAACCTCA CCGGCCAGGT CCGCAACATC GCCGAAGTGA CCACAGCGGT GGCGCGCGGC
GACTTGTCGA AGAAGATCAC CGTCGACGTG AAGGGCGAGA TCCTCGAGCT GAAGAACACG
ATCAACACCA TGGTCGACCA GCTCAACTCC TTCGCATCCG AAGTGACCCG CGTCGCGCGC
GAGGTGGGCA CCGAGGGGCG CCTTGGCGGA CAGGCGCAGG TCGAAGGCGT CGGCGGCACG
TGGAAGGACC TTACCGACAA CGTCAACGCC ATGGCCGCGA ACCTCACCGG CCAGGTCCGC
AACATCGCCG AGGTCACGAC CGCCGTGGCA CTGGGCGACT TGTCCAAGAA GATCACCGTC
GACGTGAAGG GCGAAATCCT CGAGCTGAAG AACACGATCA ACACCATGGT CGACCAGCTC
AATTCCTTCG CATCCGAAGT GACCCGCGTC GCGCGCGAGG TCGGCACCGA GGGCAAGCTC
GGCGGACAGG CACACGTGCG CGGCGTGGCA GGCACGTGGA AGGACCTCAC CGACAACGTC
AACCTCATGG CCGACAACCT CACCGGCCAG GTCCGCAACA TCGCGGACGT TACCACCGCC
GTGGCGCGCG GCGACTTGTC CAAGAAGATC ACCGTCGACG TGAAGGGCGA AATCCTCGCG
CTCAAGAACA CGATCAACAC CATGGTCGAC CAGCTCAACG GCTTCGCGTC CGAAGTGACC
CGCGTCGCCC GCGAGGTCGG CACCGAGGGC AAGCTCGGCG GACAGGCGCA GGTGCCGGGC
GTCGGCGGCA CGTGGAAGGA CCTTACCGAC AACGTCAACC TCATGGCGAC CAACCTCACC
AACCAGGTGC GAGGGATCGC CGGGGTGGTG ACCGCGGTGG CGCAGGGCAA TCTCAAGCGC
AAGCTGACCT TCGACGCCAA GGGCGAGATC GCCGCGCTGG CCGAGACGAT CAACGGCATG
ATCGAGACGC TTTCGACCTT TGGCGACCAG GTGACCAACA TGGCCCGCGA GGTCGGCGTC
GAAGGCCGCC TTGGTGGGCA GGCGCGCGTG CCGGGCGCGG CGGGCCTGTG GCGCGACCTG
ACCGACAACG TCAACGCGAT GGCGGCAAAC CTCACCAACC AGGTGCGCTC AATCGCCGAA
GTGGCGACCG CCGTTACCAA GGGCGACCTT ACCCGCTCCA TCGCGGTGGA AGCCTCGGGC
GAAATGGCCG CGCTCAAGGA CAACATCAAC GAGATGATCC TCAACCTCAA GGATCAGACG
CTGAAGAACG CCGAACAGGA CTGGCTCAAG ACCAACCTCG CCCGCTTCAG CCGCATGTTG
CAGGGCGAGC GCGACCTTGC CACCATCTCC AACCTCATCA TGTCCGAGCT GGCCCCGCTG
GTGAACGCGC AATACGGCGT GTTCTACGTG ACCAGCCGCG ACGACGAGGA GCAGAACCGG
CTGGAACTCG TCGCCAGCTA CGGCGCGGAA AACCACGATC AGCTCAAGCG CCAGTTCGCC
TTGCGCGAAG GCCTGATCGG CCAGGCCGCG GCCGACAAGC GCCCGATCCG CCTGTCGCGC
GTGCCGGACG ATTTCATCCG CATCGGCTCC GGCCTCGGCC AGGCCAAGCC CGCCAACATC
CAGATCCTGC CGGCGCTGTT CGAGGACGAG GTCAAGGCGG TGATCGAGCT GGCCTCGTTC
GAGGAGTTCA ACGAGACCCA CCACAGCTTC CTCAACCAGC TCATGGAAAC CGTGGGCATC
GTGCTCAACA CCATTGCCGC GACCATGCGC ACCGAGGGCC TGCTTGCACA GTCGCAGCTC
CTGACGCAGG AACTCCAGGC CCGGCAGACC GAACTGACCC GCAAGCAGGA AGAACTCCAC
GCGACCAACG AGGAGCTTCA GGAAAAGGCG CAGCTTCTCG AGAACGAGAA GAAGCAGGTC
GAAGCCAAGA ACTTCGAGAT CGAGATGGCG CGCCGCGCGG TCGAGGAGAA GGCCGAACAG
CTCGCACTCA CCTCGAAGTA CAAGTCCGAA TTCCTCGCCA ACATGAGCCA CGAGCTGCGC
ACCCCGCTCA ACTCGCTGCT CATCCTGTCC AAGCTTCTGG CCGATAACCA GCAGGGCAAC
CTGAACGAGA AGCAGACCGA ATTCGCGCGC ACGATCCACG GCGCCGGCAC CGACCTGCTC
AACCTCATCA ACGATATCCT CGACCTGTCG AAGATCGAAT CCGGCACCGT GTCCATCGAC
ATCGGCGACA TGTCGATCCC GGGCATGAAG CAGCACGTCG AGCGAACCTT CCGCCAGGTC
GCCTCGGAAA AGGGCCTCGC CTTCGAGATC GACTTCGACG ATAGCCTGCC GGCCTCGATC
CAGACGGACG AGAAGCGGTT GCAGCAGATC GTGCTCAACC TCCTGTCCAA CGCCTTCAAG
TTCACTGCGA GAGGCCGCGT CACGCTCAAC GTCCGGCCGG CACGGCACGG CTGGAGCCCG
ACCCACCCGG TGCTTGGCGA CCTGGACCGC GCGCTGGAAA TCTCCGTCAG CGATACCGGC
ATCGGCATTC CCGAAGACAA GCAGAAGCTC ATCTTCGAGG CGTTCCAGCA GGCCGACGGC
ACGACCAGCC GCAAGTACGG CGGCACCGGG CTTGGCCTTT CCATCAGCCG CGAGATCGCC
CGCCTGCTCG GCGGCGAACT TCAGGTGCGT TCGGTGCCGG GCGAAGGTTC GACCTTCACG
CTCTACGTGC CGATGAAGGC GGTCATCACC TCGCCCGCCC TGCTTGCCGC CCCTACGACC
GAAAACGACC CGGTCGTGAC CTTCGCGCCG CAGGACGACC GCGACGAGTT GGACGGCAAG
CCCTTCGTCA TGATCGTCGA GGATGACCCG ACCTTCGCCA CGATCCTGAT CGATCTTGCC
CACCAGTGCG GCCTCAAGGG CGTCATCTCC TCCGCCGGCT CCGGCACCGT GGCCATGGTC
CGCAAGCTGA AGCCGAGCGC GATCACGCTC GACCTCGGGC TTTCCGACAT CGACGGCTTC
GTGCTTCTCG ATCTTCTCAG GAACGAACCC GATACCTCGA GCGTACCTGT CCATGTGATC
TCGGGCGCCG ATCAGGCCGC CCATGCGCTT ACGCTGGGTG CGGCGGGCGT GATCGAAAAA
CCCGCAAGTC GCGAGGAGTT GCAGGCGCTG TTCGAGTCAA TTGCCGACAG GTCCCGCAAT
GCCGCGATGC GCCGCAAGAC AGCCCGTGCG ACGCAGTCCG CCAATATGTC CGACAACCAG
CCACGGCTTG CCGGCAGCCG CATCCTCATC GTCGATGACG ACATCCGCAA CATCTACTCC
CTGACAAGCG TGCTGGAATC GCACGACGTC GAGGTCGTCC ATGCAGAGGG CGGCGTGGAA
GGCATCCGCA TCCTTGAAAG CACGCCCGGC ATCGATGTGG CGCTGATCGA CATCATGATG
CCCGACATGG ATGGATACGA GACCATGCGG CAGATCCGCG CGACGCCCGC GATTGCCTCG
ATCCCGCTCG TCGCGGTGAC AGCCAAGGCC ATGAAGGGCG ATCGCCAGAA GTGTCTGGAT
GCCGGGGCTT CCGACTATAT CTCCAAGCCC GTCGACATCG ATCTGCTCCT TGCGCTGCTT
CGCGTCTGGA TCGGGCGCAG CCGTAGCCAG CAGTCGCTCG TGACCGATCA GGGAATGCAG
GTGGTCTGA
|
|---|
| Protein sequence | MDDLATKAEP AIGRHELVSA LRKLRNGDFT VSLPDDGSEI ATLFNEVVGL NRRMTDECQR
LSRVVGKEGK IGHRASVRGA QGDWDLTLCA INELIDDMVQ PTTEVARVIG SVAKGDLSQT
MAVEIEGRAL RGEFLRIGKV VNTMVEQLAS FASEVTRVAR EVGTEGKLGG QANVKGVAGT
WKDLTENVNL MAANLTGQVR NIAEVTTAVA LGNLSKKITV DVKGEILELK NTINTMVDQL
NGFASEVTRV AREVGTEGKL GGQAQVPGVA GTWKDLTDNV NLMAANLTGQ VRNIAEVTTA
VASGDLSKKI TVDVKGEILE LKNTINVMVD QLNGFASEVT RVAREVGTEG KLGGQAQVPG
VAGTWKDLTD NVNLMADNLT GQVRNIAEVT TAVASGDLSK KITVDVKGEI LELKNTINVM
VDQLNGFASE VTRVAREVGT DGKLGGQAQV PGVAGTWKDL TDNVNLMADN LTGQVRNIAE
VTTAVAKGDL SKKITVEVRG EILELKNTIN TMVDQLNSFA SEVTRVAREV GTEGRLGGQA
RVPGVGGTWK DLTDNVNAMA GNLTGQVRNI AEVTTAVARG DLSKKITVDV KGEILELKNT
INTMVDQLNS FASEVTRVAR EVGTEGRLGG QAQVEGVGGT WKDLTDNVNA MAANLTGQVR
NIAEVTTAVA LGDLSKKITV DVKGEILELK NTINTMVDQL NSFASEVTRV AREVGTEGKL
GGQAHVRGVA GTWKDLTDNV NLMADNLTGQ VRNIADVTTA VARGDLSKKI TVDVKGEILA
LKNTINTMVD QLNGFASEVT RVAREVGTEG KLGGQAQVPG VGGTWKDLTD NVNLMATNLT
NQVRGIAGVV TAVAQGNLKR KLTFDAKGEI AALAETINGM IETLSTFGDQ VTNMAREVGV
EGRLGGQARV PGAAGLWRDL TDNVNAMAAN LTNQVRSIAE VATAVTKGDL TRSIAVEASG
EMAALKDNIN EMILNLKDQT LKNAEQDWLK TNLARFSRML QGERDLATIS NLIMSELAPL
VNAQYGVFYV TSRDDEEQNR LELVASYGAE NHDQLKRQFA LREGLIGQAA ADKRPIRLSR
VPDDFIRIGS GLGQAKPANI QILPALFEDE VKAVIELASF EEFNETHHSF LNQLMETVGI
VLNTIAATMR TEGLLAQSQL LTQELQARQT ELTRKQEELH ATNEELQEKA QLLENEKKQV
EAKNFEIEMA RRAVEEKAEQ LALTSKYKSE FLANMSHELR TPLNSLLILS KLLADNQQGN
LNEKQTEFAR TIHGAGTDLL NLINDILDLS KIESGTVSID IGDMSIPGMK QHVERTFRQV
ASEKGLAFEI DFDDSLPASI QTDEKRLQQI VLNLLSNAFK FTARGRVTLN VRPARHGWSP
THPVLGDLDR ALEISVSDTG IGIPEDKQKL IFEAFQQADG TTSRKYGGTG LGLSISREIA
RLLGGELQVR SVPGEGSTFT LYVPMKAVIT SPALLAAPTT ENDPVVTFAP QDDRDELDGK
PFVMIVEDDP TFATILIDLA HQCGLKGVIS SAGSGTVAMV RKLKPSAITL DLGLSDIDGF
VLLDLLRNEP DTSSVPVHVI SGADQAAHAL TLGAAGVIEK PASREELQAL FESIADRSRN
AAMRRKTARA TQSANMSDNQ PRLAGSRILI VDDDIRNIYS LTSVLESHDV EVVHAEGGVE
GIRILESTPG IDVALIDIMM PDMDGYETMR QIRATPAIAS IPLVAVTAKA MKGDRQKCLD
AGASDYISKP VDIDLLLALL RVWIGRSRSQ QSLVTDQGMQ VV
|
|---|
| |