Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_3453 |
Symbol | |
ID | 5077602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_009427 |
Strand | - |
Start bp | 55829 |
End bp | 58399 |
Gene Length | 2571 bp |
Protein Length | 856 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640481177 |
Product | TonB-dependent receptor |
Protein accession | YP_001165839 |
Protein GI | 146275679 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0426513 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAAC TGCTTGCCGC GGGCGCGAGC CTGCTTGCCT TATCGCTTTC GACTCAGGCC TTTGCGCAGG ATGCCGCACA GGCGGAAGAC AAGTCGCCCA ACATCGAGGA AATCGTCGTC ACCGCGCAGT TCCGCGCGCA GAACCTTCAG GACACGCCGC TGGCGATCAC TGCCGTCAGC GGTGAACTCC TCGCGCAGCG CGGCCAGACC AACGTCAGCG AAATCGCCGC GCAGTCGCCC AACGTTACGT TGAAGCCCCA GGGCCAGGAA CTCGGGCCGG GCATCATCGC CTTCATTCGC GGCGTCGGCC AGACCGACCC CAACTTCGCG CTCGAACCGG GCGTGGGTAT GTACATCGAC GATGTCTACC TGCCCACGCT GACCGGATCG CTGCTCGACC TGACCGATCT CGATCGCGTC GAGGTGCTGC GCGGTCCCCA GGGCACGCTC GCCGGCCGCA ATTCGCTCGG CGGCTCGATC AAGCTTTATT CGAAGAAGCC AGAAGGCAGC AACACCGGCT CGGTCGAGGT GACCTATGGC CGCTACAACC GTCTAGATGC GCGCGGTCTG TTTGACGTCA AGCTCTCGAA CAACCTGTTC ATGCGTGTCG CCGGCGTGAC CAAGAACGTC GACGGCTACG TCAAGCGGCT CGACTACAAC CTGACCCATC CGGGTACCAA CGTGCCTACG CTGGCCAAGG GTTCGAACCC GGTTCTCGGC ACGCTCGGCG GGCAATCCTA TGCCGCGGGC AAGGTCTCGC TGCGCTGGCA GCCGACCGAG ACGATCGATA TCAACCTCAC CGGTGACTAC ACCCGCGAAC GCAACGAACC GGGCGCGAAC GTCCTGCTCT TTGCCAATAC CTCCGCAACG TTCGATGGCC CGAACGCGGC GGGCACCGGG GGCCGTCCGT TCCTCGCGGG CACTGATGGG GTCGGCATTC CGCTCAACTG TGCTTTTGTG CCGAACGGGG CGAATAGCTG CGACACGATC AGCGGCTACG ATCGCCGCTT CATCTCCTAC GCGACTTATG CGGATCTGGC CCAGGCCGAC AGCCAGATGC CCTACAAGCA GACCTTCCTC GATCCGCATT CGGACCTCGA CAACTATGGC GCGGCGCTGA CCATCGACGT CGACCTGTCG GATGCGCTGA AGTTCAAGTC GATCACCTCC TGGCGCAAGT ATGAAGCCGA CTGGTCCTAT GACTCCGACG GTTCGCCCAT CGCCAACAAC CTGCTGAACC AGAACCAGCG CAACCGGCAG TGGAGTCAGG AACTGCGGCT TTCGGGCAAG GTTCTCGACG ATGCGCTCGA TTTCACTGTC GGCGGCTTCT ACTTCGACGC GCGCGGCACC TTCACCGGGC GTATCAACCT CAACTATGCC GGCATCGATT TCCGCCACGG TCCCGATCCG ACGCCTGCCA AGAACAAGGC GCTGTTCGCC AACGCTACCT GGCACATCAC CGATGCTGCG AACCTTACCG GCGGCATCCG TCAGTCGTGG GACGAGAAGG ACTACGTCTA CGTCCGCAAG AATCCCGACG GGACCGACAT CGAGGGACCG TGCAACTTCT TCCTCGGTGC CGCCACCGCA GGTCCAACGG GCATCGGCAA CCAGCCGAAC TGCCTGCTCT TTGGGCTTGA CGGGTTGACC GCGAAGTTCC GCGACAATCG CATCGACTGG CGCATCGCGG CCGACTATCG CTTCAGCCCC GAGTTCCTGT TCTATGCGCA GGTCTCGACC GGCTACCGCG CCGGCGGCGT CAATCCGCGT CCGTTCTATG CAAGCCAGGC AACCGCCTTC AAGCCGGAGA CGATCACCGC CTATGAAGCG GGCTTCAAGT CGGACCTGTT CGGCCGCAAG CTGCGCCTCA ATGTTTCGGC CTTCTTCAAC GACTACAAGA ACATCATCCT GTCGAGCGTG AACTGCCTCG ATCTCGCCAC GGCGGGTCCG GGCGGCACTT CGCAGGCTAC CCCGTGCCTG CGTCCGTCGA ATGTCGGTTC GGCCCACGTC AAGGGCTTCG AGGTCGAGAC CCTGATCCGC CCGATCGACA ACTTCACCAT CGACGGCTCG CTCAGCTACC TCGACTTCAA GTACCAGAGC GTCGACACCG CCTCGACCGG GGTGACCAAG GACGATGTCA CGCCCTACAC GCCCAAATGG AAGGCCGCGT TCGGCGTGCA GTACGACTTC CAGGACGTTC TCAAGGGCAC TGTCACGGTG CGCTTCGACG GTGCCTACCA GTCGAAGATC TACACCGAGG CCGCTAACAT CGACAGCGTT TCGGTCAGCA GCACCGTCGC TGCCGGGACG GGTGGCTTCA GCAATGCCGG TGGCGGCGGG TCGATCACCA CGCTGCGCCT GTCAAACCGC ATCGACGGAT ACTTCCTCGC CAACGCGCGG GTAGGCTGGC AGTCGGAAGA CAAGGACTGG GGCCTCACCT TTGAAGTCCA GAACCTGACC AACAAGTACT ACTTCACGAC GCTCCTCCAG GAAGCGTTCG GTGCGGGCAC CGCCTCGGGC GCCCCGGGCC GCCCGCGCAC CTGGTCGGTC ACCGCGCGTC GTTCGTTCTG A
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Protein sequence | MMKLLAAGAS LLALSLSTQA FAQDAAQAED KSPNIEEIVV TAQFRAQNLQ DTPLAITAVS GELLAQRGQT NVSEIAAQSP NVTLKPQGQE LGPGIIAFIR GVGQTDPNFA LEPGVGMYID DVYLPTLTGS LLDLTDLDRV EVLRGPQGTL AGRNSLGGSI KLYSKKPEGS NTGSVEVTYG RYNRLDARGL FDVKLSNNLF MRVAGVTKNV DGYVKRLDYN LTHPGTNVPT LAKGSNPVLG TLGGQSYAAG KVSLRWQPTE TIDINLTGDY TRERNEPGAN VLLFANTSAT FDGPNAAGTG GRPFLAGTDG VGIPLNCAFV PNGANSCDTI SGYDRRFISY ATYADLAQAD SQMPYKQTFL DPHSDLDNYG AALTIDVDLS DALKFKSITS WRKYEADWSY DSDGSPIANN LLNQNQRNRQ WSQELRLSGK VLDDALDFTV GGFYFDARGT FTGRINLNYA GIDFRHGPDP TPAKNKALFA NATWHITDAA NLTGGIRQSW DEKDYVYVRK NPDGTDIEGP CNFFLGAATA GPTGIGNQPN CLLFGLDGLT AKFRDNRIDW RIAADYRFSP EFLFYAQVST GYRAGGVNPR PFYASQATAF KPETITAYEA GFKSDLFGRK LRLNVSAFFN DYKNIILSSV NCLDLATAGP GGTSQATPCL RPSNVGSAHV KGFEVETLIR PIDNFTIDGS LSYLDFKYQS VDTASTGVTK DDVTPYTPKW KAAFGVQYDF QDVLKGTVTV RFDGAYQSKI YTEAANIDSV SVSSTVAAGT GGFSNAGGGG SITTLRLSNR IDGYFLANAR VGWQSEDKDW GLTFEVQNLT NKYYFTTLLQ EAFGAGTASG APGRPRTWSV TARRSF
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