Gene Saro_3439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3439 
Symbol 
ID5077588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009427 
Strand
Start bp41088 
End bp41801 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content70% 
IMG OID640481163 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001165825 
Protein GI146275665 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGATC GCCTGTCCGG CAAGGTCGCG GTCGTCACCG GCGCTGCGGC GGGCATCGGC 
AAGGGCTGCG CCCGCATTTT CCGCGAGGAG GGAGCCGCCG TCATCGGCGT CGATCTTGCA
GGGGCGGACC GCGCCTGCGA CCTGACCGAC GAGACGCAGG TTTCAGCGCT GTTCGCCGCG
ATCGTGGCCG AGCACGGCAG GATCGACGTG CTTGTGAACG CCGCCGCCTT TGCGGTCTTC
GCGTGGATCG AGGAAATGAC CCTTGCGGAG TGGCGGCGCA CGCTGACCGG CGAACTCGAC
ACCGTTTTCC TGCCGACGCG CGCGGCCTGG GCGGGCCTCA AGGCCAGCGG CGCTGCCAGC
GTGATCAACT TCGCCAGCGC CAACGCGCGC CACGCGCTCG ACGGTTCGGC CGCGCTCGCG
CATTGCGCGG GCAAGGGCGG CGTCCTTGCG ATGACGCGGC AGCTCGCGAT GGAAGGTGCC
CCTCACGGCA TCCGCGCCAA CTCGATCTCT CCGGGCTTCA TCCGCACCGA GGCGACGGGA
CGCCACCTTG CCGAAGTCCC GGACCTGCGC GACCGGGTCC TTGCCAAGAA CATGGTCAAA
CGCCTTGGCG AGCCTGAAGA CATCGCGTGG TGCGCCACAT GGCTCGCCAG CGACGAGGCC
CGCTATGTCA CCGGGGCCGA CATTGCCGTG GATGGGGGCG CGACGGCCTG GTAG
 
Protein sequence
MPDRLSGKVA VVTGAAAGIG KGCARIFREE GAAVIGVDLA GADRACDLTD ETQVSALFAA 
IVAEHGRIDV LVNAAAFAVF AWIEEMTLAE WRRTLTGELD TVFLPTRAAW AGLKASGAAS
VINFASANAR HALDGSAALA HCAGKGGVLA MTRQLAMEGA PHGIRANSIS PGFIRTEATG
RHLAEVPDLR DRVLAKNMVK RLGEPEDIAW CATWLASDEA RYVTGADIAV DGGATAW