| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_4009 |
|---|
| Symbol | |
|---|
| ID | 5077539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009426 |
|---|
| Strand | - |
|---|
| Start bp | 176656 |
|---|
| End bp | 178032 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640481114 |
|---|
| Product | TraB pilus assembly family protein |
|---|
| Protein accession | YP_001165776 |
|---|
| Protein GI | 146275615 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.702041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACTGGA AGAACCCGTT CCGCAAAGGC CCCAAGGCGC TCGACGGTCC CGCAACCCAC
CCTGGAAGTG GTGACGCCTC GCCGCTCGGC GATGCAATCG TGGCCAATGA GGCGGTCAGG
AAGAAGCAGA TGCTGCTGCT CGGCGCTGGC GGTCTTGCCG CGCTTGTCAT CGGCTCCTCG
TGGATCTTCG CCGGCGATCA CAAGAGCAGC GACGCCAGCG TCAAGCGGCA GGTCGCCGAC
GTCTCGGTCG ACGAGATGGT CAACAAGAAC ATGGCCGAGA AGGAGTGGCG TGCCCAGTCC
GAGGCGCAGA TGATGTCGAT GGACACCAAC ATGCGCGCGC TCGCTGCCCG TGCGCAGCGG
GCCGACCAGT TGGAAGCGCA GCTGGCCCAG GGTCAGGCAG CGCAGAGCAC GTCAGGCGGC
GGGATATCTC CCGACACCGA GCGGGTGCTT TCCGCCTACC AGAACGAGAA TGAGCAGTTG
AAGGCAGCGC TCGCAGCCGC GCGCCAGTCG CCGGTCATGG GTGCCGGCGC GACACCGGTC
GGACCCAACG CGCTTTACGG GCGGACCAGC CCACCGAGCT ACCAGACCGC GCCCAGCACG
CCTGCCGGGC AAGCCGCAAT GGCCGCGGCG GGACTCCCGG CAGGGCGCGG GAGCGAGGTC
AGCCTGGTCT CGTTCAACGA GGGCGCAAGC GGAACCGGAA GCCCGGTCCC CAAGGGCAAC
ACTGTCTTCA CCGACAGCGC CAATTACCTG CCGCCGAACT CGATCGCGGT CGCCAAGGTC
ATAGTCGGGG TCGATGCGGC CGCCGGCGTC CAGAGTCAGA CCGATCCCCT GCCGGTCGTG
CTGCGCATCA CCGGCCCTGC GCGCTCGGTC TACGACAACG GGCGGCTGCT CACGACCAAT
ATCGCCGGAT GCCTGGTCAA CGGCGCGGCG CGCGGCGACC TCTCGAGCGA GAAGGTCTAC
GTCAAGCTGC AGCGCATGAC CTGCCCGCAG CCCAATGGCC GTTACGCGGT CTCGGACGTC
AAGGGCTTCA TCGCCTTCGG CGGCAAGACC GGGGTCAGGG GGAGGGTGGT CAGCCGGGAA
GGTTCGCTGA TCGGCCAGGC CTTCCTTGCC GGTCTCGCCG GCGGCTTTGG CCGCGGCTTT
GCCGCCAACA CCAATTCGAC GCTCACCGGA ACAAACGTCA ACGTCAATGG GCAGCGCCAG
AAGCTCGGCA CCGGCGACAT CCTCGAGGGC GGGCTCGGCG AAGGCATCGC CACCTCGGGC
GACATGGTCA GCAAGTACCT GATCGAGCGG GCCGAACAGT ACCAGCCCGT GATCGAGATG
CCGACCGGGA TCGATGTCGA AATCGTGTTT CTCGAAGGCG TGTTCATCAA CGGGTGA
|
|---|
| Protein sequence | MDWKNPFRKG PKALDGPATH PGSGDASPLG DAIVANEAVR KKQMLLLGAG GLAALVIGSS
WIFAGDHKSS DASVKRQVAD VSVDEMVNKN MAEKEWRAQS EAQMMSMDTN MRALAARAQR
ADQLEAQLAQ GQAAQSTSGG GISPDTERVL SAYQNENEQL KAALAAARQS PVMGAGATPV
GPNALYGRTS PPSYQTAPST PAGQAAMAAA GLPAGRGSEV SLVSFNEGAS GTGSPVPKGN
TVFTDSANYL PPNSIAVAKV IVGVDAAAGV QSQTDPLPVV LRITGPARSV YDNGRLLTTN
IAGCLVNGAA RGDLSSEKVY VKLQRMTCPQ PNGRYAVSDV KGFIAFGGKT GVRGRVVSRE
GSLIGQAFLA GLAGGFGRGF AANTNSTLTG TNVNVNGQRQ KLGTGDILEG GLGEGIATSG
DMVSKYLIER AEQYQPVIEM PTGIDVEIVF LEGVFING
|
|---|
| |