| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3905 |
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| Symbol | |
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| ID | 5077389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009426 |
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| Strand | - |
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| Start bp | 75746 |
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| End bp | 77197 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640481012 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001165674 |
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| Protein GI | 146275513 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.512285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGCTA AGCTCTTAGC TGCTCCGGGA GCCTTGGCAG TACTTGCGCT GGCGGGTTGC
GTTGCGGTTC CCGACGCCGG AGTTCGTCCG GTCATGGAAA CCGCCGACAC AATCGAGGCT
GCGCAGACGT TGGCCGCGCG CGGCAATACG ACCTGGCCGC CAGACCAATG GTGGCGTCTG
GCGGGCGATC CGCAACTGAC TGCGCTGATC GAGGAGGGCC TTTCCAATGC ACCGCAGGTT
GCGGTGGCGG TGGCGCGGGT CAGGCGCGCG GAAGCCGAGG CGCAGCGCGT CGGGGCCGCG
CGGTTGCCAA CGATTGGGGC GGAAGCTGAG GGCGGTCTGC GCCGCCAGAG CGGCAACAAC
GGCATCCCCG CACAGTTCCT TCCCGATGGG TGGCAGGACT ATGGACAGAC CTCGCTGAGC
TTCGGCTTCG ACCTCGACCT GTGGGGTCGC AACCGCGCGG CCTATGCTGC CGCGACATCG
GAGGCCCGCG CGGCGATGGT CGATGCGGCG CAGGCTCGCC TCGTGCTGTC GGTCGCGATA
ACCGCCGCCT ACGCAGAGCT CGGGCGCCAT TACCGCGAGC GCGACAACGC AGCGGCCACG
CTCGCCAACC GCCGCTTGAT GCGCGATCTT GTCGCCCAGC GCCAACGCAA CGGGCTCGAC
AACCTCGCCA GCCTGCGCCG CGCCGATGCC GAAGTTGCCT TGGCGGAGCA GGATCTGGCA
GCCGTCGATG AGAACATCGG CATCCGCCGC AACCAGCTTG CCGCGCTCCT GGGTGCTGGC
CCGGATCGGG GAACGTCGAT TACCCGTCTG CCGCTTGCAC CCTCGACACC CGGCGGGGTT
CCCGCCGGTG TCACCACCGA CCTGCTTGGC AGGCGGCCCG ATATCGTCGC CGCGCGCGAG
CGCGTGGAAG CGGCGGCGAG CCGCGTCAAA GTGGCGCGGG CCGGGTTCTT CCCGTCGATC
AACCTCAGGG CGCTGATTGG CCTTCAGGCG CTCGGTCTCG GCAATCTCGT CGCTTCCGGC
TCCTTGTTCG GAAGCGTCGG TCCGGCCATC AGCCTGCCGA TCTTTCAGGG CGGCGCGCTC
AAAGCGCAAT ATGGCAGTGC CGAGGCCGCC TATGACGAGG CCGTCGCAAA CTACAACCAG
ACCGTTGTCA CCGCGTACCA GCAGGCTGCC GACGCGGTGA CCCAGCGCGA CGCAGCGGAC
AAGCGGCTTG GCGCAACCCG CACGGCGCTG GCCGCAAGCG AGGAAGCGCT AGGTCTGGTG
CGCACACGCT ACGAGGCCGG GCTTGCCAGT TACCTCGACG TCCTCGCCAG CGAACGCGGT
GTGCAGGACC TACGCGTCGC GGTCATCGGC CTTGAGACAT ACGAACGCGG CGCGACGCTG
GCGATGATCC GTGCACTGGG CGGCGGGTTC GACGCGGGCA CTACCCAACC ATCAGGACAG
ACCGAGCAAT GA
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| Protein sequence | MSAKLLAAPG ALAVLALAGC VAVPDAGVRP VMETADTIEA AQTLAARGNT TWPPDQWWRL
AGDPQLTALI EEGLSNAPQV AVAVARVRRA EAEAQRVGAA RLPTIGAEAE GGLRRQSGNN
GIPAQFLPDG WQDYGQTSLS FGFDLDLWGR NRAAYAAATS EARAAMVDAA QARLVLSVAI
TAAYAELGRH YRERDNAAAT LANRRLMRDL VAQRQRNGLD NLASLRRADA EVALAEQDLA
AVDENIGIRR NQLAALLGAG PDRGTSITRL PLAPSTPGGV PAGVTTDLLG RRPDIVAARE
RVEAAASRVK VARAGFFPSI NLRALIGLQA LGLGNLVASG SLFGSVGPAI SLPIFQGGAL
KAQYGSAEAA YDEAVANYNQ TVVTAYQQAA DAVTQRDAAD KRLGATRTAL AASEEALGLV
RTRYEAGLAS YLDVLASERG VQDLRVAVIG LETYERGATL AMIRALGGGF DAGTTQPSGQ
TEQ
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