Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_3871 |
Symbol | |
ID | 5077482 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_009426 |
Strand | + |
Start bp | 38624 |
End bp | 41122 |
Gene Length | 2499 bp |
Protein Length | 832 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640480980 |
Product | TonB-dependent receptor |
Protein accession | YP_001165642 |
Protein GI | 146275481 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.234106 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAACC GACTAATGTA TTTCAGGAAG GCCTTCCTGC GTGCCAGCGC CTCGGCTATG GTCGGATACA TCGGGCTTGT GCCGATTTCG GCGCATGCAC AGGATGCCGC AGCAAGCGAG CCCCAGGCCG AGGAGCAACA GACCGGCGGC CTCGAAGAGA TCACCGTGAC AGCGCGCAAG CGGGCCGAGA ACCTGCAGGA AACACCAGTC GCGATCACCG CGATGACCGG CGGAATGCTC GAGGAACGCC AGGTCACCAA CGTAGCAGAA GTCGCAAAAT TCGCGCCGAA CGTGAACATC TCGCCGGTCG CCAACATTTC GGGTTCGAGC GCCTCGATCA CCGCGTTCAT CCGCGGCGTG GGCCAGACCG ATTTCAATAT CACCGTCGAC CCGGGCGTGG GCGTCTATGT CGATGGCGTC TATGTTGCCC GCTCGGTTGG CGCGCTGCTC GACATGGCCG ACGTTTCGAG CGTCCAGGTC CTGCGCGGGC CGCAGGGCAC ACTGTTCGGC AAGAACACTA TCGGCGGCGC GATCGTCGTC AATTCCGTCG AACCGCAGAA CGATTTCGAC ATGAAGCTCG AAGCGGCGAC CGGACGGTTC AACCGCGCCG ATTTCAAGGG CATGATCAAC GTACCGCTGA GCGACACTCT CGCAATGCGC GCGGTTGCTT CCTATGAAAC CCGCGACGGC TACCAGAAGC GTTTGTTCGA CGGAGGCCGC CAGGGCAATA AGGACAGCTT CGGCGGACGC ATTGCGTTCA AGTGGGAGCC GACCGACAAG CTGACCGTCA ACCTGAGCGG CGATATCAAT ATCAGGCGCG AAGAAATGGC TGCTTCGACG CTGGTCAACC TTTTCGAATC GCCCAACCTG CTGCAGGTTG TCGACTTGAA TGGCCGAACC GTGGTTTTCC CCAGTTCGAC TTATGCTTGG AACAAGTTGC AGGGCGGCGC AGGTTTCTGC GGTGCGGACG GGCAACTGGC ACCGGTCAAC GACCCGCGCT GCGCCACCAC GCAGTGGATC ACCGGCGATA TCGATTCAAC CTGGTCCGGT GCCAAGAACC AGTCGGATTT CGACCTGTGG GGCACGAACC TGACGCTGGA TTATGATTTT GGTGACATCA ACCTGAAGTC GATCAGCTCC TATCGCGATC AGAAGGCCAC GATCCAGTTC GACTTCGACG GAACGCCACA TCCCTACCTC AACCTGACAA ACAATATCGA TCTGTGGCAG GCTTCGCAGG AATTCCAGTT GACCGGCAGT GTCCTGAATG ATCGGGTGAA GTTCGTTCTG GGCGGCTATT ACCTGAAGGA AAAGGGCCAA GACAAGAACA ACCTGCTGTT CGGCTTCGCT GACTTCTTCA GCGGCGGCAA GATCGACAAC GACAGCTATG CTGCCTATCT GCAGGCAACG ATCAAGGTGA CCGATCGTCT TTCGATCACG CCGGGCATCC GCTATACCGA CGAGACCAAG CGGTTCGATC CTTCGTTCCA GACCATCAAT GTTGATTACA CTGCTCCGCT TGGGCAGGCC GGCATCATCC CTTACCCCCA GGGCGTGTTC ATCGCCTTCA GCCAGTGCGT GACCGGCCAG CCAGTGCCCT TGCTGGTGAC CGATCCGGCG AGCCCGCTGT TCGGCTTCCC GCTGCCTGGA GGCTGCGCAC CAGCCGCCAC TAACCCTGGT GGAAACCACA CGATGCCGGC GGTCCAGGTT GCCGCCAAGG CCAAGGAATG GACGCCGGCA ATTTCGGCTG ACTACAAGAT CACCGACGAT ATCCTGGTCT ATGCCTCCTA TTCCAAGGGT TTCAAGAACG GCGGCTTCAC GCAGCGAATC TTCCCGGCTG AACAGGTTGC GCCGTCGTTC AGGCCCGAAT TCGTGGAATC ATACGAACTC GGCCTCAAGA CCGAGCTGCT GGATCGCCGC CTGCGGCTGA ACCTCGCCGC GTTCATGTCA AACTACGATG ACATCCAGGT CGTCGTCAGC GAAGGCATCG CCCCCCGGGC ACGAAACGCC GGTTCCGGCC GGATCAAAGG CTTTGAAGTC GAAGGCGAGG CGGCTCCGAC CGATTGGCTG CGCCTGACCT TCGGCGTTGG CTATCTTGAT GCCTATTACC GCTCCATTGA TCCGCTCGCG TTCCCCGTGA ACCTGAACTC GAAGTTCGCC TTCGTGCCGG AATGGACCGG ATCGGCCTCG TTCAACGCCG ACGTCTATGA AGGTGACATG GGCAAGCTGA CGCTGCGCGG AGACTGGTCG TACCAGAGCG AAACCTTCAA GGATGCGGTC AACAGCCCGC AACTGCGCCA GCCTGGCTAC AGCGTCTTCG GCGCCAGTGC TTCGTTCACC GAGAAGAGCG AGCACTTCAC CGTGACCGCT GGTGTGACCA ACCTGACCGA CGAACGCTAT ATCCAGGGCG GTTACGTAGA TCCGTTCGTC GCCGGGACAG CGTTGGCAAC CTATTCGCGC CCGCGTGAAT GGTTCCTCAA GCTCGCCTAT AAGTACTGA
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Protein sequence | MPNRLMYFRK AFLRASASAM VGYIGLVPIS AHAQDAAASE PQAEEQQTGG LEEITVTARK RAENLQETPV AITAMTGGML EERQVTNVAE VAKFAPNVNI SPVANISGSS ASITAFIRGV GQTDFNITVD PGVGVYVDGV YVARSVGALL DMADVSSVQV LRGPQGTLFG KNTIGGAIVV NSVEPQNDFD MKLEAATGRF NRADFKGMIN VPLSDTLAMR AVASYETRDG YQKRLFDGGR QGNKDSFGGR IAFKWEPTDK LTVNLSGDIN IRREEMAAST LVNLFESPNL LQVVDLNGRT VVFPSSTYAW NKLQGGAGFC GADGQLAPVN DPRCATTQWI TGDIDSTWSG AKNQSDFDLW GTNLTLDYDF GDINLKSISS YRDQKATIQF DFDGTPHPYL NLTNNIDLWQ ASQEFQLTGS VLNDRVKFVL GGYYLKEKGQ DKNNLLFGFA DFFSGGKIDN DSYAAYLQAT IKVTDRLSIT PGIRYTDETK RFDPSFQTIN VDYTAPLGQA GIIPYPQGVF IAFSQCVTGQ PVPLLVTDPA SPLFGFPLPG GCAPAATNPG GNHTMPAVQV AAKAKEWTPA ISADYKITDD ILVYASYSKG FKNGGFTQRI FPAEQVAPSF RPEFVESYEL GLKTELLDRR LRLNLAAFMS NYDDIQVVVS EGIAPRARNA GSGRIKGFEV EGEAAPTDWL RLTFGVGYLD AYYRSIDPLA FPVNLNSKFA FVPEWTGSAS FNADVYEGDM GKLTLRGDWS YQSETFKDAV NSPQLRQPGY SVFGASASFT EKSEHFTVTA GVTNLTDERY IQGGYVDPFV AGTALATYSR PREWFLKLAY KY
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