Gene Saro_3852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3852 
Symbol 
ID5077463 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_009426 
Strand- 
Start bp20420 
End bp21451 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content62% 
IMG OID640480961 
Product4-hydroxy-2-ketovalerate aldolase 
Protein accessionYP_001165623 
Protein GI146275462 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR03217] 4-hydroxy-2-oxovalerate aldolase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTTTG ATCCAACATC TGATCGGCTC TACATCCAGG ACGTGACCTT GCGCGACGGG 
ATGCACGCCA TCCTGCATAT GTATGGCACC GACAGCGTCC GCACGATCGC TAAGGCGCTT 
GACGAGGCAG GGGTGGATGC GATCGAGGTC TCGCACGGCG ATGGCCTGAA CGGTTCGACC 
TTCAATTACG GATTTGGCGC CCATACCGAC TGGGACTGGA TCGAGGCTGC CGCCGACGTA 
ATCAAGAACG CGGTGCTGAC AACGCTTCTG GTGCCCGGTA TCGGCACCGC CGAAGAACTC 
AAGCGGGCCT ATTCGATGGG AGTGCGCTCG GTCAGGGTCG CGACCCACTG CACCGAGGCC 
GACGTCGGCA AGCAGCACAT CGGCATCGCG CGCGATCTAG GCATGGACGT ATCGGGCTTC 
CTGATGATGA GCCACATGAT CGAGCCCGAG GCGCTCGCCC AGCAGGCGCT GCTGATGGAA 
AGCTATGGCG CGCATTGCGT CTATGTCACC GACAGCGGCG GGGCGCTCGA CATGGATGGC 
GTGATTGCAC GTCTCCAAGC CTATGACCGG GTGCTCAAAC CTGAAACCCA ACGCGGCATC 
CATGCGCACC ACAATCTGTC CCTGGGCGTG GCCAATTCGA TCGTCGCCGC GCAAGCCGGC 
GCGGTGCGGA TCGACGCGAG CCTTGCCGGG ATGGGTGCGG GAGCCGGTAA CGCACCGCTC 
GAGGTGTTCA TCGCCGCCGC CAACCGCAAG GGCTGGAAGC ACGGCTGCGA CGTGATGGCG 
CTGATGGACG CGGCGGACGA CATCATACGC CCGCTTCAGG ACCGTCCGGT GAGGGTCGAT 
CGCGAGACGC TCAGCCTGGG CTATGCAGGC GTCTATTCAA GCTTCCTGCG CCATGCGGAA 
AAGGCAGCGG AACAGTACGG AATCGATACC CGCGAGATCC TCGTCGAATT GGGCAACCGC 
CGGATGGTCG GAGGCCAGGA AGACATGATC ATCGACGTTG CACTTGATCT GATCAAAGCC 
AAGGCGAACT GA
 
Protein sequence
MTFDPTSDRL YIQDVTLRDG MHAILHMYGT DSVRTIAKAL DEAGVDAIEV SHGDGLNGST 
FNYGFGAHTD WDWIEAAADV IKNAVLTTLL VPGIGTAEEL KRAYSMGVRS VRVATHCTEA 
DVGKQHIGIA RDLGMDVSGF LMMSHMIEPE ALAQQALLME SYGAHCVYVT DSGGALDMDG 
VIARLQAYDR VLKPETQRGI HAHHNLSLGV ANSIVAAQAG AVRIDASLAG MGAGAGNAPL 
EVFIAAANRK GWKHGCDVMA LMDAADDIIR PLQDRPVRVD RETLSLGYAG VYSSFLRHAE 
KAAEQYGIDT REILVELGNR RMVGGQEDMI IDVALDLIKA KAN