| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3839 |
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| Symbol | |
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| ID | 5077450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009426 |
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| Strand | - |
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| Start bp | 6095 |
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| End bp | 7735 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640480949 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001165611 |
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| Protein GI | 146275450 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.719613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACAC TTCCAGGCTA CGCCGACATT GCCAGCAAGC TGCAGTTCTC ACCGGAAATG
GGCCGGATCT GGCACGATGG TGAACGCTGC GTACTGCTCA GCCAAGCGGC TCTGGCCAGC
TGGCGCAGCC GCCTAGTTGC CGAATTGGGG CACGAAGCGG CCAGCCGGTT CTTCTGGGGT
GTCGGTTTTG CCGAAGGCGC ACGGTGCGCG ATCGGCGCGA AAAAATTACG CCCGGATGGT
GATTATCTTG AAGCATTCGC GGTCGGACCG CAGGCGCACG CCTTGACCGG GTTTGGCTGG
ACCCAGATCG AAATCCTGGA AAATGATTCC TCGCGAGGGC ATTTCGAAGG CCGGTTCAGG
GTCCACGATT CGATCGAGGC GGCGATCCAT CTCAGCGCGA CCGGGTACAG CACTGACCCG
GTGTGCTGGA TGCAGACTGG CTTTGCCAGC GGCTTTGCCA CAACCTTCGC GGGACAACCG
ATCATCATGC GCGAAGTGGA ATGTGCGGGG CGAGGCGATG CCGCCTGCGT ACTTCACGCC
AAACCAAAAC CCGAATGGGA TCAGTTGGAC AACCTCGAAT TGGCCGCGAC GCCGCTGGTC
CTGCCCGAAA CGCGGCATGA TGGGGGCCAA ACGGTGATTG GGATCTCGGC AGGGTTCCTC
TCAGCCAAGA CCATGATCGA ACGCACCGCG TCGAGCAATG CGACGCTGCT GTTAATGGGC
GAGACCGGGG TCGGCAAGGA AGTGCTGGCC AAGCTCGCTC ATCGGCTGAG CATGCGCGAG
GCGGAGCCGT TCATCGCGCT CAACTGCGCG GCGATCCCCG AGGGGTTGAT CGAATCGGAG
CTGTTCGGCG TGGCCAAGGG GGCCTATACT GGCGCGGTTG CCGCCCGGCC CGGTCGGTTC
GAGCTGGCCA ATGGCGGCAC GCTGTTCCTG GACGAGATTT CGACACTGTC GCCACTTGCA
CAATCGAAGA TTCTGCGCGC TGTCCAGGAA GGTGAGTTCG AGCGGGTCGG CGATACGCGG
ACGATCAAGG TGGATGTCCG ATTGATCGCA GCATCCAATG TGGAACTTAA CGAGGCGGTG
CGGGAAGGCA CGTTTCGTGC CGACTTGTTC TACCGGATAT CGACTTTGCC GGTCCGGGTG
CCGCCGCTGC GCCAGCGCCG CGAGGACATT CCGGTGCTGC TGGAACACTT CCGTCTGCAT
TATGCCATGC GCCATGGCCG AACGGTATCG GGCTTCACCC CGCGGGCGAT CAACGCGCTG
CTGGTGTACG ATTTCCCCGG TAATGTGCGC GAACTCGAGC GAATGGTGGA ACGTGCCGTG
CTGCTGGCGG ACGACGGGCG AGCGATCGAC GTCAGGCACC TGTTCCTCGA AACCGACGGT
CTCGAATTGA AGCCGACGAT GGGCATGACC AACGATGGCA GGATCAGCGC CGTTGACAAT
GTCGGCGATC GCGCCGGCTT GGTGCGCCAG ATGCTGGATC TGATCGTCGA TGGGGGCGGA
AGCCTGCTGG AGATGGAAGG GCTGGTGATC CGCGAGGCCC TTGATGCGAG TGGGGGCAAC
GTTGCGCGCG CGGCGCGCAC CTTAGGCTTT ACCCGTCGGC AGCTCGCCTT GCGTCTTGAA
AAGTTGGAAA TCCAGGAATA A
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| Protein sequence | MKTLPGYADI ASKLQFSPEM GRIWHDGERC VLLSQAALAS WRSRLVAELG HEAASRFFWG
VGFAEGARCA IGAKKLRPDG DYLEAFAVGP QAHALTGFGW TQIEILENDS SRGHFEGRFR
VHDSIEAAIH LSATGYSTDP VCWMQTGFAS GFATTFAGQP IIMREVECAG RGDAACVLHA
KPKPEWDQLD NLELAATPLV LPETRHDGGQ TVIGISAGFL SAKTMIERTA SSNATLLLMG
ETGVGKEVLA KLAHRLSMRE AEPFIALNCA AIPEGLIESE LFGVAKGAYT GAVAARPGRF
ELANGGTLFL DEISTLSPLA QSKILRAVQE GEFERVGDTR TIKVDVRLIA ASNVELNEAV
REGTFRADLF YRISTLPVRV PPLRQRREDI PVLLEHFRLH YAMRHGRTVS GFTPRAINAL
LVYDFPGNVR ELERMVERAV LLADDGRAID VRHLFLETDG LELKPTMGMT NDGRISAVDN
VGDRAGLVRQ MLDLIVDGGG SLLEMEGLVI REALDASGGN VARAARTLGF TRRQLALRLE
KLEIQE
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