Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4494 |
Symbol | |
ID | 5060984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 5085026 |
End bp | 5085778 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640476761 |
Product | LytTr DNA-binding region |
Protein accession | YP_001161300 |
Protein GI | 145597003 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3279] Response regulator of the LytR/AlgR family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0706486 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.304613 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCGGGT TCCTCCGGGT CCTGGCGGTC GACGACGAGC CACCGGCCCT CGACGAACTG GCGTACCACC TGCGAGCTGA CCCTCGGGTC GCCCGGCTGC ACACCGCCGG TGACGCCACC GAGGCGTTGC GGGTGCTCCG CGACGGGGAC GTGGACGCGG TTTTCCTCGA TATCCGAATG CCGGGCCTGG ACGGTATGGA GCTGGCCCGG GTACTGCGAC GCTTCGCCCG GCCGCCGGCC ATCGTCTTCG TCACCGCCTA CGACGATGGC GCGGTGGACG CGTTCGACCT GGGCGCCATC GATTACGTCC GCAAACCCGT CCGGGCCGAG CGGCTGGCCG AGTCGCTGCG CCGGGTGATC GGCTCGCGGC GGGTACCCAC GCAACTGGCG ACGCCGACCC GGGAGGAGGA TCCGGCGATC CCGGTCGAGC TCGCCGGGAC GACCCGGATG CTGCCCCGTT CGGCGGTGCG CTGGGTGGAG GCGCAGGGTG ACTACGTGCG ATTGCACACC ACAGACGGTT CCCACCTGGT CCGGGTGTCC CTGGCGACCC TGGCCGAGCG GTGGGCGGAC GCCGGTTTCG TCCGAATCCA CCGGTCCTAC CTCGTCCAGT TACGGCTCAT CGCGGAGCTA CGGCTGGCGC ACTCCGGCTA CGTGGTGGTG GTCGGCTCGA CCGAGTTGCC GGTCAGTAGG CGGCACACCC GCGAGCTGAA GGAGAAGCTG ATCCGAACAG CCAAGCAGGG CTGGGCCCGC TGA
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Protein sequence | MIGFLRVLAV DDEPPALDEL AYHLRADPRV ARLHTAGDAT EALRVLRDGD VDAVFLDIRM PGLDGMELAR VLRRFARPPA IVFVTAYDDG AVDAFDLGAI DYVRKPVRAE RLAESLRRVI GSRRVPTQLA TPTREEDPAI PVELAGTTRM LPRSAVRWVE AQGDYVRLHT TDGSHLVRVS LATLAERWAD AGFVRIHRSY LVQLRLIAEL RLAHSGYVVV VGSTELPVSR RHTRELKEKL IRTAKQGWAR
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